生物信息资源管理

• http://git.bioinfofungi.com/
• http://bioinfofungi.gitee.io/web

技术

• SpringBoot
• mysql
• jap
• H2 database
• 线程池
• java系统调用R

功能

• 项目报告管理
• 癌症数据资源管理

设计

• data matrix
  • cancer (癌症)[ESCA、BRAC...]
  • study(研究)[mRNA、miRNA、lncRNA...]
  • dataOrigin(数据来源)[TCGA、GEO...]
  • dataCategory(数据分类)[FPKM、Counts、clinical...]
  • analysisSoftware(分析软件)[limma、DESeq2...]
  • dataId数据Id

Swagger

• http://localhost:8080/swagger-ui.html
• http://localhost:8080/doc.html

测试

• https://bioinfofungi.gitee.io/bioinfo_web_ui/
• http://git.bioinfofungi.com/

前台配置Local Storage

url_port:{"url":"localhost","port":"8080"}

数据初始化

http://localhost:8080/api/cancer/init?authorize=XXXXXX&path=/home/wangyang/Downloads/TCGADOWNLOAD/Cancer.tsv
http://localhost:8080/api/study/init?authorize=XXXXXX&path=/home/wangyang/Downloads/TCGADOWNLOAD/Study.tsv
http://localhost:8080/api/data_origin/init?authorize=XXXXXX&path=/home/wangyang/Downloads/TCGADOWNLOAD/DataOrigin.tsv
http://localhost:8080/api/data_category/init?authorize=XXXXXX&path=/home/wangyang/Downloads/TCGADOWNLOAD/DataCategory.tsv
http://localhost:8080/api/analysis_software/init?authorize=XXXXXX&path=/home/wangyang/Downloads/TCGADOWNLOAD/AnalysisSoftware.tsv

http://localhost:8080/api/cancer_study/init?authorize=XXXXXX&path=/home/wangyang/Downloads/TCGADOWNLOAD/CancerStudy.tsv

http://localhost:8080/api/data_import/init?authorize=XXXXXX&path=/home/wangyang/Downloads/TCGADOWNLOAD

• http://localhost:8080/h2-console

联系

• Email: 1749748955@qq.com
• Email: 3300297450@qq.com

代码贡献

git clone https://github.com/BioinfoFungi/bioinfo_analysis.git

迁移后提交

• 方法有三种
  • 修改命令:git remote origin set-url [url]
  • 先删后加
    • git remote rm origin
    • git remote add origin [url]
  • 直接修改config文件

git remote add origin_1 https://github.com/BioinfoFungi/bioinfo_analysis.git
git add .
git commit -m 'XXXX'
git status
git push origin_1 master

参考

• https://blog.csdn.net/weixin_45824805/article/details/108732251
• https://jtablesaw.github.io/tablesaw/
• https://blog.csdn.net/weixin_37595711/article/details/85137760
• https://jtablesaw.github.io/tablesaw/userguide/toc
• Spring boot缓存