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@BiomedSciAI

BiomedSciAI

README.md

BiomedSciAI

🙋‍♀️ What is BiomedSciAI?

Our mission is to accelerate scientific discovery in Biomedical Sciences through a variety of tools that can help scientists do their research quicker and more effectively.

Whether you use population-scale data like EHRs, body-part data like medical imaging, subcellullar-scale data like spatially resolved omics, or a combination of various modalities, we host tools that will help you make the most out of it.

🌈 How can I get involved?

If you want to contribute and get involved check out the guidelines of the repository of your interest and our code of conduct.

👩‍💻 How can I use it?

We have plenty of stuff you can do with BiomedSciAI. A good starting point is to check out the pinned repositories. You can find all implementation details and some examples in the docs.

Try out the examples in the repositories that we prepared for various applications.

Pinned

  1. histocartography histocartography Public

    A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

    Python 226 52

  2. DPM360 DPM360 Public

    Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data

    JavaScript 19 4

  3. fuse-med-ml fuse-med-ml Public

    A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)

    Python 126 35

  4. causallib causallib Public

    A Python package for modular causal inference analysis and model evaluations

    Python 663 93

Repositories

Showing 9 of 9 repositories
  • fuse-drug Public

    FuseMedML based molecular biochemistry library for drug discovery/repurposing

    Python 11 Apache-2.0 5 9 3 Updated May 2, 2024
  • fuse-med-ml Public

    A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)

    Python 126 Apache-2.0 35 24 (5 issues need help) 10 Updated Apr 18, 2024
  • histocartography Public

    A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

    Python 226 AGPL-3.0 52 16 5 Updated Dec 23, 2023
  • Geno4SD Public

    An python omics data toolkit for the analysis across biological scales

    Jupyter Notebook 7 Apache-2.0 1 0 0 Updated Dec 5, 2023
  • causallib Public

    A Python package for modular causal inference analysis and model evaluations

    Python 663 Apache-2.0 93 2 1 Updated Oct 25, 2023
  • r-BRICS Public

    Revised breaking of retrosynthetically interesting chemical substructures (r-BRICS) – a revised BRICS module based on rdKit that breaks ring structures and carbon chains

    Python 4 0 0 0 Updated Jul 24, 2023
  • multimodal-models-toolkit Public
    Jupyter Notebook 5 0 1 0 Updated Jun 23, 2023
  • DPM360 Public

    Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data

    JavaScript 19 Apache-2.0 4 6 0 Updated May 9, 2023
  • .github Public
    0 0 1 0 Updated Mar 22, 2023

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