update: update version 0.4.5

BiomedicalMachineLearning · Mar 1, 2022 · 8b23265 · 8b23265
1 parent 23aa59d
commit 8b23265
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Showing 8 changed files with 15 additions and 13 deletions.
diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
@@ -15,7 +15,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.8]
+        python-version: [3.7, 3.8]
 
     steps:
     - uses: actions/checkout@v2

diff --git a/HISTORY.rst b/HISTORY.rst
@@ -2,7 +2,7 @@
 History
 =======
 
-0.4.1 (2022-02-28)
+0.4.5 (2022-03-02)
 ------------------
 0.4.0 (2022-02-03)
 ------------------

diff --git a/MANIFEST.in b/MANIFEST.in
@@ -3,6 +3,7 @@ include CONTRIBUTING.rst
 include HISTORY.rst
 include LICENSE
 include README.rst
+include requirements.txt
 
 recursive-include tests *
 recursive-exclude * __pycache__

diff --git a/requirements.txt b/requirements.txt
@@ -1,8 +1,8 @@
-bokeh == 2.4.2
-numba==0.55.1
-numpy==1.21.5
-#fa2 == 0.3.5
-Pillow==9.0.1
-scanpy==1.8.2
-scikit-image==0.19.2
-tensorflow==2.8.0
+bokeh>= 2.4.2
+leidenalg
+louvain
+numpy>=1.18,<1.22
+Pillow>=9.0.1
+scanpy>=1.8.2
+scikit-image>=0.19.2
+tensorflow
diff --git a/setup.cfg b/setup.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.4.1
+current_version = 0.4.5
 commit = True
 tag = True
 

diff --git a/setup.py b/setup.py
@@ -28,6 +28,7 @@
         "License :: OSI Approved :: BSD License",
         "Natural Language :: English",
         "Programming Language :: Python :: 3",
+        "Programming Language :: Python :: 3.7",
         "Programming Language :: Python :: 3.8",
     ],
     description="A downstream analysis toolkit for Spatial Transcriptomic data",
@@ -48,6 +49,6 @@
     test_suite="tests",
     tests_require=test_requirements,
     url="https://github.com/BiomedicalMachineLearning/stLearn",
-    version="0.4.1",
+    version="0.4.5",
     zip_safe=False,
 )
diff --git a/stlearn/__init__.py b/stlearn/__init__.py
@@ -2,7 +2,7 @@
 
 __author__ = """Genomics and Machine Learning lab"""
 __email__ = "duy.pham@uq.edu.au"
-__version__ = "0.4.1"
+__version__ = "0.4.5"
 
 
 from . import add

diff --git a/stlearn/tools/microenv/__init__.py b/stlearn/tools/microenv/__init__.py