SCOP_modules

Functional modules for analysing single cell omics data.

DEGs detection

sncRNA_DEGs.R: An example of identifying DEGs in a scRNAseq data set (test_object.Rdata) using mixed-effect model.

Cell type annotation

extract_markers.R: An example of extracting marker genes from a reference dataset (ref.cam.hypo.rds), from https://www.nature.com/articles/nn.4495.

cell_type_annotation.R: An example of annnotating cell types in a query dataset (test.data.B10_ref.based.Rdata).