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Is bcolz works on mac os Catalina? #399

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AnitaKanaeva opened this issue Oct 16, 2019 · 6 comments
Open

Is bcolz works on mac os Catalina? #399

AnitaKanaeva opened this issue Oct 16, 2019 · 6 comments

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@AnitaKanaeva
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Hi, I tried to install bcolz 1.2.1 (on mac os Catalina) and got this error:
pip3 install bcolz Collecting bcolz Using cached https://files.pythonhosted.org/packages/5c/4e/23942de9d5c0fb16f10335fa83e52b431bcb8c0d4a8419c9ac206268c279/bcolz-1.2.1.tar.gz Requirement already satisfied: numpy>=1.7 in /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages (from bcolz) Installing collected packages: bcolz Running setup.py install for bcolz ... error Complete output from command /Library/Frameworks/Python.framework/Versions/3.6/bin/python3.6 -u -c "import setuptools, tokenize;__file__='/private/var/folders/2y/pqxw45wn70nclm6djplz6mch0000gn/T/pip-build-evgwjrxk/bcolz/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /var/folders/2y/pqxw45wn70nclm6djplz6mch0000gn/T/pip-29ctcmke-record/install-record.txt --single-version-externally-managed --compile: SSE2 detected AVX2 detected running install running build running build_py creating build creating build/lib.macosx-10.6-intel-3.6 creating build/lib.macosx-10.6-intel-3.6/bcolz copying bcolz/py2help_tests.py -> build/lib.macosx-10.6-intel-3.6/bcolz copying bcolz/version.py -> build/lib.macosx-10.6-intel-3.6/bcolz copying bcolz/toplevel.py -> build/lib.macosx-10.6-intel-3.6/bcolz copying bcolz/ctable.py -> build/lib.macosx-10.6-intel-3.6/bcolz copying bcolz/__init__.py -> build/lib.macosx-10.6-intel-3.6/bcolz copying bcolz/utils.py -> build/lib.macosx-10.6-intel-3.6/bcolz copying bcolz/chunked_eval.py -> build/lib.macosx-10.6-intel-3.6/bcolz copying bcolz/defaults.py -> build/lib.macosx-10.6-intel-3.6/bcolz copying bcolz/attrs.py -> build/lib.macosx-10.6-intel-3.6/bcolz copying bcolz/py2help.py -> build/lib.macosx-10.6-intel-3.6/bcolz copying bcolz/arrayprint.py -> build/lib.macosx-10.6-intel-3.6/bcolz creating build/lib.macosx-10.6-intel-3.6/bcolz/tests copying bcolz/tests/test_ndcarray.py -> build/lib.macosx-10.6-intel-3.6/bcolz/tests copying bcolz/tests/test_carray_objects.py -> build/lib.macosx-10.6-intel-3.6/bcolz/tests copying bcolz/tests/test_attrs.py -> build/lib.macosx-10.6-intel-3.6/bcolz/tests copying bcolz/tests/__init__.py -> build/lib.macosx-10.6-intel-3.6/bcolz/tests copying bcolz/tests/all.py -> build/lib.macosx-10.6-intel-3.6/bcolz/tests copying bcolz/tests/common.py -> build/lib.macosx-10.6-intel-3.6/bcolz/tests copying bcolz/tests/test_queries.py -> build/lib.macosx-10.6-intel-3.6/bcolz/tests copying bcolz/tests/test_ctable.py -> build/lib.macosx-10.6-intel-3.6/bcolz/tests copying bcolz/tests/test_carray.py -> build/lib.macosx-10.6-intel-3.6/bcolz/tests copying bcolz/carray_ext.pxd -> build/lib.macosx-10.6-intel-3.6/bcolz running build_ext skipping 'bcolz/carray_ext.c' Cython extension (up-to-date) building 'bcolz.carray_ext' extension creating build/temp.macosx-10.6-intel-3.6 creating build/temp.macosx-10.6-intel-3.6/bcolz creating build/temp.macosx-10.6-intel-3.6/c-blosc creating build/temp.macosx-10.6-intel-3.6/c-blosc/blosc creating build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs creating build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/lz4-1.8.1.2 creating build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/snappy-1.1.1 creating build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/zlib-1.2.8 creating build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/zstd-1.3.4 creating build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress creating build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder creating build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress creating build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy creating build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/zstd-1.3.4/common creating build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c bcolz/carray_ext.c -o build/temp.macosx-10.6-intel-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 In file included from bcolz/carray_ext.c:525: In file included from /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: In file included from /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816: /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ 1 warning generated. In file included from bcolz/carray_ext.c:525: In file included from /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: In file included from /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816: /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ 1 warning generated. /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.macosx-10.6-intel-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/blosc.c:874:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ c-blosc/blosc/blosc.c:1656:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ c-blosc/blosc/blosc.c:2136:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ 3 warnings generated. c-blosc/blosc/blosc.c:874:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ c-blosc/blosc/blosc.c:1656:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ c-blosc/blosc/blosc.c:2136:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ 3 warnings generated. /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.macosx-10.6-intel-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.macosx-10.6-intel-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 In file included from c-blosc/blosc/shuffle.c:11: c-blosc/blosc/shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function] static void shuffle_generic_inline(const size_t type_size, ^ c-blosc/blosc/shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function] static void unshuffle_generic_inline(const size_t type_size, ^ 2 warnings generated. In file included from c-blosc/blosc/shuffle.c:11: c-blosc/blosc/shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function] static void shuffle_generic_inline(const size_t type_size, ^ c-blosc/blosc/shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function] static void unshuffle_generic_inline(const size_t type_size, ^ 2 warnings generated. /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c c-blosc/blosc/fastcopy.c -o build/temp.macosx-10.6-intel-3.6/c-blosc/blosc/fastcopy.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/fastcopy.c:137:30: warning: unused function 'copy_32_bytes_aligned' [-Wunused-function] static inline unsigned char *copy_32_bytes_aligned(unsigned char *out, const unsigned char *from) { ^ c-blosc/blosc/fastcopy.c:270:30: warning: unused function 'chunk_memcpy_32' [-Wunused-function] static inline unsigned char *chunk_memcpy_32(unsigned char *out, const unsigned char *from, unsigned len) { ^ c-blosc/blosc/fastcopy.c:294:30: warning: unused function 'chunk_memcpy_32_unrolled' [-Wunused-function] static inline unsigned char *chunk_memcpy_32_unrolled(unsigned char *out, const unsigned char *from, unsigned len) { ^ c-blosc/blosc/fastcopy.c:402:30: warning: unused function 'chunk_memcpy_aligned' [-Wunused-function] static inline unsigned char *chunk_memcpy_aligned(unsigned char *out, const unsigned char *from, unsigned len) { ^ 4 warnings generated. c-blosc/blosc/fastcopy.c:137:30: warning: unused function 'copy_32_bytes_aligned' [-Wunused-function] static inline unsigned char *copy_32_bytes_aligned(unsigned char *out, const unsigned char *from) { ^ c-blosc/blosc/fastcopy.c:270:30: warning: unused function 'chunk_memcpy_32' [-Wunused-function] static inline unsigned char *chunk_memcpy_32(unsigned char *out, const unsigned char *from, unsigned len) { ^ c-blosc/blosc/fastcopy.c:294:30: warning: unused function 'chunk_memcpy_32_unrolled' [-Wunused-function] static inline unsigned char *chunk_memcpy_32_unrolled(unsigned char *out, const unsigned char *from, unsigned len) { ^ c-blosc/blosc/fastcopy.c:402:30: warning: unused function 'chunk_memcpy_aligned' [-Wunused-function] static inline unsigned char *chunk_memcpy_aligned(unsigned char *out, const unsigned char *from, unsigned len) { ^ 4 warnings generated. /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.macosx-10.6-intel-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/blosclz.c:148:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) { ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ c-blosc/blosc/blosclz.c:219:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) { ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ c-blosc/blosc/blosclz.c:82:24: warning: unused function 'get_run' [-Wunused-function] static inline uint8_t *get_run(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) { ^ c-blosc/blosc/blosclz.c:110:24: warning: unused function 'get_run_16' [-Wunused-function] static inline uint8_t *get_run_16(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) { ^ 4 warnings generated. c-blosc/blosc/blosclz.c:148:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) { ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ c-blosc/blosc/blosclz.c:219:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) { ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ c-blosc/blosc/blosclz.c:82:24: warning: unused function 'get_run' [-Wunused-function] static inline uint8_t *get_run(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) { ^ c-blosc/blosc/blosclz.c:110:24: warning: unused function 'get_run_16' [-Wunused-function] static inline uint8_t *get_run_16(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) { ^ 4 warnings generated. /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.macosx-10.6-intel-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.c -o build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4.c -o build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc -o build/temp.macosx-10.6-intel-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 warning: include path for stdlibc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found] c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc:29:10: fatal error: 'algorithm' file not found #include <algorithm> ^~~~~~~~~~~ 1 warning and 1 error generated. error: command '/usr/bin/clang' failed with exit status 1

@yao-eastside
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same issue here

@f3270
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f3270 commented Dec 18, 2020

+1

ERROR: Command errored out with exit status 1: /Users/fernando/Git/dip-big-data-analytics/D18/venv/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/mn/n64wwnq90rn63s9kzryhf9g80000gn/T/pip-install-jjvnent7/bcolz_36d3ecb7075b49b684c636d626f8a34f/setup.py'"'"'; __file__='"'"'/private/var/folders/mn/n64wwnq90rn63s9kzryhf9g80000gn/T/pip-install-jjvnent7/bcolz_36d3ecb7075b49b684c636d626f8a34f/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/mn/n64wwnq90rn63s9kzryhf9g80000gn/T/pip-record-9qjean1c/install-record.txt --single-version-externally-managed --compile --install-headers /Users/fernando/Git/dip-big-data-analytics/D18/venv/include/site/python3.7/bcolz Check the logs for full command output.

python 3.7.3 on OSX Catalina 10.15.7

@srikanth681
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+1 not working for me

@carlee0
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carlee0 commented Feb 10, 2021

Same here. I noticed clang was the compiler by default on my Mac so I tried to specify the compiler byenv CC=/usr/local/Cellar/gcc/10.2.0_3/bin/g++-10 pip install bcolz. I also tried to specify the version 1.2.0 as some users mentioned that the older version worked. But both to no avail. T.T

@not-william
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Did anyone fix? Same problem here

@srikanth681
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srikanth681 commented May 17, 2021 via email

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