Update license dates to 2022 (#40)

BlueBrain · Feb 9, 2022 · e061c41 · e061c41
1 parent e31c953
commit e061c41
Show file tree

Hide file tree

Showing 85 changed files with 162 additions and 89 deletions.
diff --git a/COPYING b/COPYING
@@ -187,7 +187,7 @@
       same "printed page" as the copyright notice for easier
       identification within third-party archives.
 
-   Copyright 2020-2021 Blue Brain Project / EPFL
+   Copyright 2020-2022 Blue Brain Project / EPFL
 
    Licensed under the Apache License, Version 2.0 (the "License");
    you may not use this file except in compliance with the License.

diff --git a/LICENSE.txt b/LICENSE.txt
@@ -4,7 +4,7 @@ The examples are under the CC-BY-NC-SA license, as specified by the
 LICENSE.txt file in each example repository.
 
 
-Copyright 2020-2021 Blue Brain Project / EPFL
+Copyright 2020-2022 Blue Brain Project / EPFL
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

diff --git a/README.rst b/README.rst
@@ -228,7 +228,7 @@ Funding & Acknowledgements
 The development of this project was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.
 
 
-Copyright (c) 2020-2021 Blue Brain Project/EPFL
+Copyright (c) 2020-2022 Blue Brain Project/EPFL
 
 
 .. |build| image:: https://github.com/BlueBrain/EModelRunner/actions/workflows/test.yml/badge.svg

diff --git a/emodelrunner/GUI.py b/emodelrunner/GUI.py
@@ -1,6 +1,6 @@
 """GUI."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/GUI_utils/__init__.py b/emodelrunner/GUI_utils/__init__.py
@@ -1,6 +1,6 @@
 """Python module containing GUI scripts."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/GUI_utils/frames.py b/emodelrunner/GUI_utils/frames.py
@@ -1,6 +1,6 @@
 """Frame Classes for the GUI."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/GUI_utils/interface.py b/emodelrunner/GUI_utils/interface.py
@@ -1,6 +1,6 @@
 """Main Interface."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/GUI_utils/plotshape.py b/emodelrunner/GUI_utils/plotshape.py
@@ -1,7 +1,7 @@
 # -*- coding: utf-8 -*-
 """Plot shape of neuron."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/GUI_utils/simulator.py b/emodelrunner/GUI_utils/simulator.py
@@ -1,6 +1,6 @@
 """Class containing simulation for the GUI."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/GUI_utils/style.py b/emodelrunner/GUI_utils/style.py
@@ -1,6 +1,6 @@
 """Style-related functions."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/__init__.py b/emodelrunner/__init__.py
@@ -1,6 +1,6 @@
 """emodelrunner."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/cell.py b/emodelrunner/cell.py
@@ -1,6 +1,6 @@
 """Custom Cell class."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/configuration/__init__.py b/emodelrunner/configuration/__init__.py
@@ -1,6 +1,6 @@
 """Configuration of the emodel package."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/configuration/configparser.py b/emodelrunner/configuration/configparser.py
@@ -1,6 +1,6 @@
 """Configuration parsing."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/configuration/validator.py b/emodelrunner/configuration/validator.py
@@ -1,6 +1,6 @@
 """Configuration validation."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/create_cells.py b/emodelrunner/create_cells.py
@@ -1,6 +1,6 @@
 """Functions to create cells."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/create_hoc.py b/emodelrunner/create_hoc.py
@@ -1,6 +1,6 @@
 """Creates .hoc from cell."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/create_hoc_tools.py b/emodelrunner/create_hoc_tools.py
@@ -1,6 +1,6 @@
 """Creates .hoc from cell."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/create_recordings.py b/emodelrunner/create_recordings.py
@@ -1,6 +1,6 @@
 """Functions to create recordings."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/create_stimuli.py b/emodelrunner/create_stimuli.py
@@ -1,6 +1,6 @@
 """Functions to create stimuli."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/factsheets/__init__.py b/emodelrunner/factsheets/__init__.py
@@ -1,6 +1,6 @@
 """Factsheets operations."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/factsheets/experimental_features.py b/emodelrunner/factsheets/experimental_features.py
@@ -1,6 +1,6 @@
 """Functionality to fetch the experimental features and parameters from the json files."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/factsheets/ion_channel_mechanisms.py b/emodelrunner/factsheets/ion_channel_mechanisms.py
@@ -1,6 +1,6 @@
 """To extract ion channel mechanisms information from static parameter files."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/factsheets/morphology_features.py b/emodelrunner/factsheets/morphology_features.py
@@ -1,6 +1,6 @@
 """Computation of morphology features."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/factsheets/output.py b/emodelrunner/factsheets/output.py
@@ -1,6 +1,6 @@
 """Functionality to save factsheets output."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/factsheets/physiology_features.py b/emodelrunner/factsheets/physiology_features.py
@@ -1,6 +1,6 @@
 """Physiology features extraction and representation."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/features.py b/emodelrunner/features.py
@@ -1,6 +1,6 @@
 """Feature-related classes."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/json_utilities.py b/emodelrunner/json_utilities.py
@@ -1,6 +1,6 @@
 """Json utilities."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/load.py b/emodelrunner/load.py
@@ -1,6 +1,6 @@
 """Functions mainly for loading params for run.py."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/locations.py b/emodelrunner/locations.py
@@ -1,6 +1,6 @@
 """Locations related functions and classes."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/morphology/__init__.py b/emodelrunner/morphology/__init__.py
@@ -1,6 +1,6 @@
 """Morphology module."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/morphology/builder.py b/emodelrunner/morphology/builder.py
@@ -1,12 +1,6 @@
 """Builds morphology objects."""
 
-from emodelrunner.morphology.morphology import (
-    SSCXNrnFileMorphology,
-    ThalamusNrnFileMorphology,
-)
-from emodelrunner.configuration import PackageType
-
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.
@@ -20,6 +14,12 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
+from emodelrunner.morphology.morphology import (
+    SSCXNrnFileMorphology,
+    ThalamusNrnFileMorphology,
+)
+from emodelrunner.configuration import PackageType
+
 
 def get_axon_hoc(axon_hoc_path):
     """Returns string containing axon hoc to use as replacement.

diff --git a/emodelrunner/morphology/morphology.py b/emodelrunner/morphology/morphology.py
@@ -1,6 +1,6 @@
 """Custom Morphology classes."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/output.py b/emodelrunner/output.py
@@ -1,6 +1,6 @@
 """Functions to write output."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/protocols/__init__.py b/emodelrunner/protocols/__init__.py
@@ -1,6 +1,6 @@
 """Protocols module."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/protocols/create_protocols.py b/emodelrunner/protocols/create_protocols.py
@@ -1,6 +1,6 @@
 """Protocol creation functions & custom protocol classes."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/protocols/protocols_func.py b/emodelrunner/protocols/protocols_func.py
@@ -1,6 +1,6 @@
 """Protocol-related functions."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/protocols/reader.py b/emodelrunner/protocols/reader.py
@@ -1,5 +1,19 @@
 """Protocol reading functions."""
 
+# Copyright 2020-2022 Blue Brain Project / EPFL
+
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+
+#     http://www.apache.org/licenses/LICENSE-2.0
+
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
 import logging
 import json
 from bluepyopt import ephys

diff --git a/emodelrunner/protocols/sscx_protocols.py b/emodelrunner/protocols/sscx_protocols.py
@@ -1,6 +1,6 @@
 """Ephys protocols for the SSCX packages."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/protocols/synplas_protocols.py b/emodelrunner/protocols/synplas_protocols.py
@@ -1,6 +1,6 @@
 """Protocol creation functions & custom protocol classes for Synplas packages."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/protocols/thalamus_protocols.py b/emodelrunner/protocols/thalamus_protocols.py
@@ -1,6 +1,6 @@
 """Ephys protocols for the Thalamus packages."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/recordings.py b/emodelrunner/recordings.py
@@ -1,6 +1,6 @@
 """Custom Recording class."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/run.py b/emodelrunner/run.py
@@ -1,6 +1,6 @@
 """Create python recordings."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/run_pairsim.py b/emodelrunner/run_pairsim.py
@@ -1,6 +1,6 @@
 """Run pair simulation for synapse plasticity simulation."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

diff --git a/emodelrunner/run_synplas.py b/emodelrunner/run_synplas.py
@@ -1,6 +1,6 @@
 """Run function to for synapse plasticity simulation."""
 
-# Copyright 2020-2021 Blue Brain Project / EPFL
+# Copyright 2020-2022 Blue Brain Project / EPFL
 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.