There are two steps corresponding to the eponymous directories, "image_processing" and "solve distributions." Each can be run by following the instructions in the README in the directory. The solve distribution step can also be run without running the image processing first, by using the precomputed input artifacts already in the repository. 

Acknowledgment
This study was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.

Copyright (c) 2022-2023 Blue Brain Project/EPFL