/
mouselight_dataset.hjson
73 lines (72 loc) · 1.94 KB
/
mouselight_dataset.hjson
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{
type: [
Dataset
NeuronMorphology
]
id: forge.format("identifier", "neuronmorphologies", x.neurons[0]["idString"])
brainLocation:
{
type: BrainLocation
brainRegion:
{
id: f"http://api.brain-map.org/api/v2/data/Structure/{x.neurons[0]['soma']['allenId']}"
label: x.neurons[0]["allenLabel"]
}
coordinatesInBrainAtlas:
{
valueX: x.neurons[0]["soma"]["x"]
valueY: x.neurons[0]["soma"]["y"]
valueZ: x.neurons[0]["soma"]["z"]
}
}
contribution:
{
type: Contribution
agent:
{
type: Organization
id: https://www.grid.ac/institutes/grid.443970.d
label: "Janelia Research Campus"
}
}
distribution: forge.attach(f"./mouselight/{x.neurons[0]['idString']}.swc", content_type="application/swc")
identifier: x.neurons[0]["idString"]
name: x.neurons[0]["idString"]
generation:
{
type: Generation
activity:
{
type: "nsg:NeuronMorphologyReconstruction"
hadProtocol:{
}
}
}
subject:
{
type: Subject
species: {
id: http://purl.obolibrary.org/obo/NCBITaxon_10090
label: Mus musculus
}
strain: {
label: x.neurons[0]["sample"]["strain"]
}
}
license:
{
type: License
id: https://mouselight.janelia.org
}
objectOfStudy:
{
type: ObjectOfStudy
id: http://bbp.epfl.ch/neurosciencegraph/taxonomies/objectsofstudy/singlecells
label: Single Cell
}
dateCreated: x.neurons[0]["sample"]["date"]
version: x.neurons[0]["annotationSpace"]["version"]
description: x.neurons[0]["annotationSpace"]["description"]
virus: x.neurons[0]["label"]["virus"]
fluorophore: x.neurons[0]["label"]["fluorophore"]
}