Remove show_deps.py in favor of pip-tools

.github/workflows/coverage.yml

@@ -6,7 +6,7 @@ concurrency:
 
 on:
   push:
-    branches: 
+    branches:
       - master
       - live-debug*
       - release/**
@@ -41,12 +41,12 @@ jobs:
           python-version: ${{ env.PYTHON_VERSION }}
       - uses: actions/checkout@v4
         with:
-          fetch-depth: 2    
+          fetch-depth: 2
       - name: Install Python3 dependencies
         working-directory: ${{runner.workspace}}/nmodl
         run: |
-          pip3 install -U pip setuptools
-          pip3 install --user -r <(packaging/show_deps.py -b -r .)
+          pip3 install -U pip setuptools 'pip-tools>=7.4.0'
+          pip3 install --user -r <(pip-compile --all-build-deps --all-extras --no-strip-extras 2>&1)
       - name: Restore compiler cache
         uses: actions/cache@v4
         with:

.github/workflows/nmodl-ci.yml

@@ -82,8 +82,8 @@ jobs:
       - name: Install Python3 dependencies
         working-directory: ${{runner.workspace}}/nmodl
         run: |
-          python3 -m pip install -U pip setuptools
-          python3 -m pip install --user -r <(packaging/show_deps.py -b -r .)
+          python3 -m pip install -U pip setuptools 'pip-tools>=7.4.0'
+          python3 -m pip install --user -r <(pip-compile --all-build-deps --all-extras --no-strip-extras 2>&1)
 
       - name: Install neuron-nightly
         if: ${{matrix.config.enable_usecases == 'On'}}
@@ -190,7 +190,7 @@ jobs:
           path: ${{runner.workspace}}/nmodl/build/Testing/*/Test.xml
 
       # This step will set up an SSH connection on tmate.io for live debugging.
-      # To enable it, you have to: 
+      # To enable it, you have to:
       #   * add 'live-debug-tests' to your PR title
       #   * push something to your PR branch (note that just re-running disregards the title update)
       - name: live debug session on failure (manual steps required, check `nmodl-ci.yml`)

.github/workflows/nmodl-doc.yml

@@ -6,7 +6,7 @@ concurrency:
 
 on:
   push:
-    branches: 
+    branches:
       - master
       - release/**
   pull_request:
@@ -37,7 +37,7 @@ jobs:
         uses: jwlawson/actions-setup-cmake@v1
         with:
           cmake-version: ${{ env.DESIRED_CMAKE_VERSION }}
-          
+
       - name: Install apt packages
         run: |
           sudo apt-get update
@@ -58,8 +58,8 @@ jobs:
       - name: Install Python3 dependencies
         working-directory: ${{runner.workspace}}/nmodl
         run: |
-          pip3 install -U pip setuptools
-          pip3 install --user -r <(packaging/show_deps.py -r -b .)
+          pip3 install -U pip setuptools 'pip-tools>=7.4.0'
+          pip3 install --user -r <(pip-compile --all-build-deps --all-extras --no-strip-extras 2>&1)
 
       # This step will set up an SSH connection on tmate.io for live debugging.
       # To trigger it, simply add 'live-debug-docs' to your last pushed commit message.
@@ -77,7 +77,7 @@ jobs:
             docs-${{github.ref}}-
             docs-
 
-      - name: Documentation 
+      - name: Documentation
         id: documentation
         working-directory: ${{runner.workspace}}/nmodl
         run: |
@@ -93,7 +93,7 @@ jobs:
           echo "status=done" >> $GITHUB_OUTPUT
         env:
           CCACHE_DIR: ${{runner.workspace}}/ccache
-          
+
       - name: Deploy 🚀
         uses: JamesIves/github-pages-deploy-action@v4
         if: steps.documentation.outputs.status == 'done' && startsWith(github.ref, 'refs/heads/master')

.github/workflows/sonarsource.yml

@@ -31,8 +31,8 @@ jobs:
       - name: Install Python3 dependencies
         working-directory: ${{runner.workspace}}/nmodl
         run: |
-          pip3 install -U pip setuptools
-          pip3 install --user -r <(packaging/show_deps.py -r -b .)
+          pip3 install -U pip setuptools 'pip-tools>=7.4.0'
+          pip3 install --user -r <(pip-compile --all-build-deps --all-extras --no-strip-extras 2>&1)
       - name: Install sonar-scanner and build-wrapper
         uses: SonarSource/sonarcloud-github-c-cpp@v2
       - name: Configure project

azure-pipelines.yml

@@ -87,8 +87,8 @@ stages:
         sudo apt-get install -y g++-9 flex bison libfl-dev cython libx11-dev libxcomposite-dev libncurses-dev mpich
         sudo apt-get install -y python3.8 python3.8-dev python3.8-venv ninja-build
         sudo apt-get remove -y python3-importlib-metadata
-        python3.8 -m pip install --upgrade pip setuptools
-        python3.8 -m pip install --user -r <($(Build.Repository.LocalPath)/packaging/show_deps.py -r -b $(Build.Repository.LocalPath))
+        python3.8 -m pip install --upgrade pip setuptools 'pip-tools>=7.4.0'
+        python3.8 -m pip install --user -r <(pip-compile --all-build-deps --all-extras --no-strip-extras 2>&1)
         # we manually get version 3.15.0 to make sure that changes in the cmake
         # files do not require unsupported versions of cmake in our package.
         wget --quiet --output-document=- "https://github.com/Kitware/CMake/releases/download/$CMAKE_VER/$CMAKE_PKG.tar.gz" | tar xzpf -
@@ -149,7 +149,7 @@ stages:
     - script: |
         brew install flex bison cmake python@3
         python3 -m pip install --upgrade pip setuptools
-        python3 -m pip install --user -r <($(Build.Repository.LocalPath)/packaging/show_deps.py -r -b $(Build.Repository.LocalPath))
+        python3 -m pip install --user -r <(pip-compile --all-build-deps --all-extras --no-strip-extras 2>&1)
       displayName: 'Install Dependencies'
     - script: |
         export PATH=/usr/local/opt/flex/bin:/usr/local/opt/bison/bin:$PATH;