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simulation_config.json
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/
simulation_config.json
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{
"manifest": {
"$OUTPUT_DIR": "./reporting",
"$INPUT_DIR": "./"
},
"run": {
"tstop": 1000.0,
"dt": 0.01,
"spike_threshold": -15,
"nsteps_block": 10000,
"random_seed": 42
},
"target_simulator":"CORENEURON",
"network": "$INPUT_DIR/circuit_config.json",
"conditions": {
"celsius": 34.0,
"v_init": -80,
"other": "something"
},
"node_sets_file": "$INPUT_DIR/node_sets_simple.json",
"mechanisms_dir": "../shared_components_mechanisms",
"inputs": {
"current_clamp_1": {
"input_type": "current_clamp",
"module": "linear",
"node_set": "Layer23",
"amp_start": 190.0,
"delay": 100.0,
"duration": 800.0
}
},
"output":{
"output_dir": "$OUTPUT_DIR",
"log_file": "log_spikes.log",
"spikes_file": "spikes.h5",
"spikes_sort_order": "by_time"
},
"reports": {
"soma_report": {
"cells": "Layer23",
"variable_name": "m",
"sections": "soma",
"type": "compartment",
"start_time": 0,
"end_time": 1000.0,
"dt": 0.01,
"enabled": true
},
"section_report": {
"cells": "Layer23",
"variable_name": "m",
"sections": "all",
"type": "compartment",
"start_time": 0.2,
"end_time": 0.8,
"dt": 0.02,
"file_name": "compartment_named"
}
}
}