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libsonata-report, libsonata, py-libsonata, py-neurodamus, neuron: LFP features #1953

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  • Sum lfp values across cells
  • Sonata support passing the weights file in "beta_features" section

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github-actions bot commented Apr 6, 2023

There are one or more issues with the title of this PR.
There are one or more issues with the commit message of commit e6e9112.
Commit message:

        > Enable LFP feature to sum across cells

Sonata support passing the weights file in "beta_features" section

Please satisfy at least one of the checks (one package, docs, or deploy).
The PR title must be compliant. The commit message of your commit must be compliant as well.
Issues:

  • The following packages were changed but not mentioned:
    libsonata-report, py-libsonata, py-neurodamus, neuron:
    You can simply use the above list, then explain what you changed.
    Alternatively, you can use one line per package to describe the change per package.
    Please mention at least one package.

  • The following packages were changed but not mentioned:
    libsonata-report, py-libsonata, py-neurodamus, neuron:
    You can simply use the above list, then explain what you changed.
    Alternatively, you can use one line per package to describe the change per package.
    Please mention at least one package.

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Thank you for your pull request!

Should you want to clear the PR build directory after failures, please use this pipeline. Before running the cleanup pipeline, please ensure that any PR building pipelines have been cancelled or finished running.

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The following build jobs of the deployment for this PR failed:

The following module tests failed:

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The following build jobs of the deployment for this PR failed:

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The following build jobs of the deployment for this PR failed:

@jorblancoa jorblancoa closed this Apr 12, 2023
@jorblancoa jorblancoa reopened this Apr 12, 2023
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The following build jobs of the deployment for this PR failed:

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There are one or more issues with the title of this PR.
Please satisfy at least one of the checks (one package, docs, or deploy).
The PR title must be compliant.
Issues:

  • The following packages were changed but not mentioned:
    libsonata-report, libsonata, py-libsonata, py-neurodamus, neuron:
    You can simply use the above list, then explain what you changed.
    Alternatively, you can use one line per package to describe the change per package.
    Please mention at least one package.

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The following build jobs of the deployment for this PR failed:

  * Enable LFP feature to sum across cells
  * Sonata support passing the weights file in "beta_features" section
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There are one or more issues with the title of this PR.
Please satisfy at least one of the checks (one package, docs, or deploy).
The PR title must be compliant. The commit message of your commit must be compliant as well.
Issues:

  • The following packages were changed but not mentioned:
    libsonata-report, libsonata, py-libsonata, py-neurodamus, neuron:
    You can simply use the above list, then explain what you changed.
    Alternatively, you can use one line per package to describe the change per package.
    Please mention at least one package.

@jorblancoa jorblancoa closed this Apr 12, 2023
@jorblancoa jorblancoa reopened this Apr 12, 2023
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There are one or more issues with the title of this PR.
Please satisfy at least one of the checks (one package, docs, or deploy).
The PR title must be compliant. The commit message of your commit must be compliant as well.
Issues:

  • The following packages were changed but not mentioned:
    libsonata-report, libsonata, py-libsonata, py-neurodamus, neuron:
    You can simply use the above list, then explain what you changed.
    Alternatively, you can use one line per package to describe the change per package.
    Please mention at least one package.

@jorblancoa jorblancoa closed this Apr 12, 2023
@jorblancoa jorblancoa reopened this Apr 12, 2023
@jorblancoa jorblancoa changed the title LFP features libsonata-report, libsonata, py-libsonata, py-neurodamus, neuron: LFP features Apr 12, 2023
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There are one or more issues with the title of this PR.
Please satisfy at least one of the checks (one package, docs, or deploy).
The PR title must be compliant. The commit message of your commit must be compliant as well.
Issues:

  • The following packages were changed but not mentioned:
    libsonata-report, libsonata, py-libsonata, py-neurodamus, neuron:
    You can simply use the above list, then explain what you changed.
    Alternatively, you can use one line per package to describe the change per package.
    Please mention at least one package.

@jorblancoa jorblancoa closed this Apr 12, 2023
@jorblancoa jorblancoa reopened this Apr 12, 2023
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To test your PR, use the following on BlueBrain5:

unset MODULEPATH
. /gpfs/bbp.cscs.ch/ssd/apps/bsd/pulls/1953/config/modules.sh
module load unstable

Please test the following updated modules:

  • brainbuilder/0.18.4
  • brion/3.3.9
  • connectome-tools/0.6.2
  • emsim/1.0.2
  • neurodamus-hippocampus/1.8-2.15.lfp-2.6.5
  • neurodamus-mousify/1.6-2.15.lfp-2.6.5
  • neurodamus-neocortex-multiscale/1.10-2.15.lfp-2.6.5
  • neurodamus-neocortex-plasticity/1.10-2.15.lfp-2.6.5
  • neurodamus-neocortex/1.10-2.15.lfp-2.6.5
  • neurodamus-thalamus/1.6-2.15.lfp-2.6.5
  • neuron/9.0.lfp
  • parquet-converters/0.8.0
  • placement-algorithm/2.3.0
  • psp-validation/0.5.0
  • py-archngv/2.0.2
  • py-bbp-analysis-framework/1.6.42
  • py-bbp-workflow/3.1.19
  • py-bglibpy/4.10.1
  • py-bluepy/2.5.1
  • py-bluepyemodel/0.0.11
  • py-bluepymm/0.7.65
  • py-bluepyopt/1.13.86
  • py-bluepysnap/1.0.5
  • py-connectome-manipulator/0.0.4
  • py-currentscape/0.0.10
  • py-cwl-registry/0.3.6
  • py-libsonata/0.1.19
  • py-minis-validation/0.0.5
  • py-morph-tool/2.9.0
  • py-morphology-repair-workflow/2.0.3
  • py-neurodamus/2.15.lfp
  • py-region-grower/0.3.0
  • py-sonata-network-reduction/0.1.8
  • spatial-index/2.0.0
  • spykfunc/0.17.4
  • synapsetool/0.6.3
  • touchdetector/5.7.4

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