Add functionality to parse variants from VCF files #6

	# The purpose of this action is to run `document()` of the roxygen2 package on each commit.
	# If new documentation was generated, it will automatically add a commit to the current branch.
	# This has the same effect as running `document()` locally, but
	# * ensures it cannot be forgotten
	# * saves setting up the development environment locally, which is especially useful for new contributors.
	#
	# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
	# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
	on:
	pull_request:
	paths: ["R/**", ".github/workflows"]

	name: Document

	jobs:
	document:
	runs-on: ubuntu-latest
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	steps:
	- name: Checkout repo
	uses: actions/checkout@v4
	with:
	fetch-depth: 0

	- name: Setup R
	uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- name: Install dependencies
	uses: r-lib/actions/setup-r-dependencies@v2
	with:
	extra-packages: any::roxygen2
	needs: roxygen2

	- name: Document
	run: roxygen2::roxygenise()
	shell: Rscript {0}

	- uses: stefanzweifel/git-auto-commit-action@v4
	with:
	commit_message: Roxygenize

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