v10.4: can create minipileup from vcf.gz

BoevaLab · Feb 3, 2017 · bae2244 · bae2244
1 parent b39300f
commit bae2244
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Showing 3 changed files with 2 additions and 2 deletions.
diff --git a/src/BAFpileup.cpp b/src/BAFpileup.cpp
@@ -247,7 +247,7 @@ std::string BAFpileup::intersectWithBedtools(std::string makeminipileup, std::st
     FILE *stream;
     std::string intersected = outputDir + "_SNPinNewCaptureRegions.bed";
 
-    if (makeminipileup.substr(makeminipileup.size()-3,3).compare("vcf")==0) {
+    if (makeminipileup.substr(makeminipileup.size()-3,3).compare("vcf")==0 || makeminipileup.substr(makeminipileup.size()-6,6).compare("vcf.gz")==0) {
         intersected = outputDir + "_SNPinNewCaptureRegions.vcf";
     }
 

diff --git a/src/freec b/src/freec
diff --git a/src/version.h b/src/version.h
@@ -3,7 +3,7 @@
 #define VERSION_H
 
 const double VERSION_OFFSET = 3;
-const double FREEC_VERSION = 10.3;
+const double FREEC_VERSION = 10.4;
 const double CONTROL_FREEC_VERSION = FREEC_VERSION - VERSION_OFFSET;
 
 #endif