transcription-modeling

A playground for data collected on biological entities, including but not limited to transcription factors that influence genome folding and transcriptional regulation.

Name		Name	Last commit message	Last commit date
Latest commit History 49 Commits
.ipynb_checkpoints		.ipynb_checkpoints
files/images		files/images
transcription-modeling.wiki		transcription-modeling.wiki
.gitignore		.gitignore
2022-08-31_reimplement_enhancer_proximity.ipynb		2022-08-31_reimplement_enhancer_proximity.ipynb
20220922_dNipBL_Chip_signal.ipynb		20220922_dNipBL_Chip_signal.ipynb
Nora_2017_Fig6.ipynb		Nora_2017_Fig6.ipynb
README.md		README.md
TSS_heatmaps_deseq.ipynb		TSS_heatmaps_deseq.ipynb
TSS_heatmaps_mm10.ipynb		TSS_heatmaps_mm10.ipynb
basic-deseq-mm9.ipynb		basic-deseq-mm9.ipynb
basic-sleuth-mm10.ipynb		basic-sleuth-mm10.ipynb
basic-sleuth-mm9-more.ipynb		basic-sleuth-mm9-more.ipynb
basic-sleuth-mm9.ipynb		basic-sleuth-mm9.ipynb
compare-sleuth-results.ipynb		compare-sleuth-results.ipynb
comparing_transcripts.ipynb		comparing_transcripts.ipynb
dNibl-DE.ipynb		dNibl-DE.ipynb
dNipbl-DE-analysis.ipynb		dNipbl-DE-analysis.ipynb
dWapl-DE.ipynb		dWapl-DE.ipynb
dWapl.ipynb		dWapl.ipynb
dWapl_TSS_heatmap_mm10.ipynb		dWapl_TSS_heatmap_mm10.ipynb
dWapl_metaseq_pro_enh_heatmaps.ipynb		dWapl_metaseq_pro_enh_heatmaps.ipynb
distal-enhancer-mapping-clean.ipynb		distal-enhancer-mapping-clean.ipynb
distal-enhancer-mapping-dNipbL-dWapL-index-questions.ipynb		distal-enhancer-mapping-dNipbL-dWapL-index-questions.ipynb
distal-enhancer-mapping-dNipbL-dWapL.ipynb		distal-enhancer-mapping-dNipbL-dWapL.ipynb
distal-enhancer-mapping.ipynb		distal-enhancer-mapping.ipynb
flexible_heatmap_functions_test_dWapL.ipynb		flexible_heatmap_functions_test_dWapL.ipynb
plotting_heatmap_functions.py		plotting_heatmap_functions.py
sleuth-DE.ipynb		sleuth-DE.ipynb

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