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FiberPhotometry_recordings

Code to preprocess and analyse fiberphotometry recordings in the Branco Lab.

Installation

User

If you just need to 'use' the fiberphotometry code without editing anything, you can just install it as a python package.

If you don't have one already, start by creating a python environment with python version 3.7.

Then install the fiberphotometry package with

    pip install git+https://github.com/BrancoLab/fiberphotometry.git

The package requires additional libraries that can be installed from github with:

pip install git+https://github.com/BrancoLab/Behaviour.git
pip install git+https://github.com/FedeClaudi/fcutils.git
pip install git+https://github.com/BrancoLab/tdmstovideo_converter.git

Developer

To edit and contribute to the code, clone this repository to your computer. To use the cloned code you'll need a python environment that satisfies the same requirements outlined above, but without fiberphotometry installed as a package.

Usage

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