[WIP] Citational Engagement

Reproduction material for paper

Paper abstract:

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This repository contains:

• Links to additional material
• Results and outputs presented in the paper
• Data collection and analysis code
• Instruction to reproduce

The paper and other resources

• Provide link to data.
• Provide link to preprint.
• Provide link to published version.

Reproduction

Requirements

• Python v3.x.x
• Poetry v1.x.x

Instructions

All scripts required to run are located in scripts.

1. 1_query_pubmed.py - Retrieves a list of DOIs based on Pubmed query saved in data/raw_data/pubmed/query.txt
2. 2_collect_scite.py - Collects all required Scite data based on the seed DOIs saved in data/raw_data/pubmed/seed.csv
3. 3_process_scite.py - Transforms and merges data from Scite and creates processed datasets in data/processed/

Data exploration and analysis is conducted in notebooks which can be found in notebooks/.