Hackathon #39

Workflow file for this run

.github/workflows/test_notebook.yml at 1376624

	name: Docker Image CI

	on:
	push:
	branches: [master]
	pull_request:
	branches: [master]

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- name: Generate Docker metadata
	id: meta
	uses: docker/metadata-action@v3
	with:
	images: \|
	oceandata.azurecr.io/odc-example-notebooks-testrunner
	flavor: \|
	latest=true
	- name: Setup Docker Buildx
	uses: docker/setup-buildx-action@v1
	- uses: azure/docker-login@v1
	with:
	login-server: oceandata.azurecr.io
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}
	- uses: actions/checkout@v3
	- name: Build and push the docker image
	uses: docker/build-push-action@v2
	env:
	DOCKER_BUILDKIT: 1
	with:
	push: true
	tags: ${{ steps.meta.outputs.tags }}
	labels: ${{ steps.meta.outputs.labels }}


	run_tests_obis-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for obis-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/OBIS/OBIS.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_marineregions-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for marineregions-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/SDK/ExampleNotebooks/MarineRegions.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_worms-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for worms-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/Worms/WoRMS.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_lusedata-app-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for lusedata-app-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/lusedata/Lusedata_app.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_lusedatapull-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for lusedatapull-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/lusedata/LusedataPull.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_gebco-bathymetry-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for gebco-bathymetry-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/GEBCO Bathymetry/GEBCO_Bathymetry.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_protectedseas-mpa-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for protectedseas-mpa-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/ProtectedSeas MPA/ProtectedSeas_MPA.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_worldoceandatabase-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for worldoceandatabase-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/World Ocean Database/WorldOceanDatabase.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_worldoceanatlas-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for worldoceanatlas-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/World Ocean Atlas/WorldOceanAtlas.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_noaa-crw-time-series-classification-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for noaa-crw-time-series-classification-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/NOAA Coral Reef Watch/NOAA_CRW_time_series_classification.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_noaa-crw-bleaching-classifier-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for noaa-crw-bleaching-classifier-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/NOAA Coral Reef Watch/NOAA_CRW_bleaching_classifier.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_wids-crw-bleaching-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for wids-crw-bleaching-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/NOAA Coral Reef Watch/WiDS/WiDS_CRW_bleaching.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_timeseries-classification-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for timeseries-classification-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/NOAA Coral Reef Watch/WiDS/timeseries_classification.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_wids-classification-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for wids-classification-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/NOAA Coral Reef Watch/WiDS/WiDS_classification.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_oceanlab-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for oceanlab-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/OceanLab/OceanLab.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_griddedvesselemissionsandtraffic-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for griddedvesselemissionsandtraffic-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/GlobalVesselEmissions/GriddedVesselEmissionsAndTraffic.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_emodnet-human-activity-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for emodnet-human-activity-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/data/EMODnet_Human_Activity/EMODnet_human_activity.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

	run_tests_simulator-comparing-emissions-ipynb:
	needs: build
	runs-on: ubuntu-latest
	container:
	image: oceandata.azurecr.io/odc-example-notebooks-testrunner:latest
	credentials:
	username: ${{ secrets.ACR_USERNAME }}
	password: ${{ secrets.ACR_PASSWORD }}

	steps:
	- uses: actions/checkout@v3
	- run: ls -l $GITHUB_WORKSPACE
	- run: ls -l $GITHUB_WORKSPACE/..
	- name: List nox sessions
	run: nox -l -f $GITHUB_WORKSPACE/noxfile.py
	- name: Run tests for simulator-comparing-emissions-ipynb
	run:
	nox -s "test_notebook-3.9(notebook_file='/__w/OceanDataConnector/OceanDataConnector/Data Products/Simulator, Comparing Emissions.ipynb')" -f $GITHUB_WORKSPACE/noxfile.py
	env:
	ODE_CONNECTION_STR: ${{ secrets.ODE_CONNECTION_STR }}
	ODE_MAPBOX_API_TOKEN: ${{ secrets.ODE_MAPBOX_API_TOKEN }}
	DATABASE_URL: ${{ secrets.ODC_DATABASE_URL }}

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Hackathon #39

Workflow file

Hackathon #39

Jobs

Run details

Workflow file for this run