Added automatic database update (fixing #87 ?)

CAMI-challenge · Mar 5, 2021 · a0cc7e1 · a0cc7e1
1 parent efdb1df
commit a0cc7e1
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/scripts/get_genomes.py b/scripts/get_genomes.py
@@ -42,6 +42,7 @@ def run_patch(): # patching ete3 version
 
 run_patch()
 ncbi = NCBITaxa()
+ncbi.update_taxonomy_database()
 RANKS = ['species', 'genus', 'family', 'order', 'class', 'phylum', 'superkingdom']
 MAX_RANK = 'family'
 _log = None