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Perfusion Alignment fixes #1363

Merged
merged 57 commits into from
Nov 6, 2020
Merged

Perfusion Alignment fixes #1363

merged 57 commits into from
Nov 6, 2020

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sarthakpati
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Fixes issue #1235

Proposed Changes

  • Perfusion Alignment fixes

@sarthakpati
added new parameter
2ce5a82
@sarthakpati
Merge branch 'master' of https://github.com/CBICA/CaPTk into 1235
2686f81
@sarthakpati
finished CLI, started parsing
d68f7db
@sarthakpati
updated parsing
0c94dad
@sarthakpati
updated example
fbd415f
@sarthakpati
passing all parameters into compute function
77e9822
@sarthakpati
re-enabled the application from CLI
5ec94b3
@sarthakpati
added mask to computation api
4127ce2
@sarthakpati
return mask
4a0a565
@sarthakpati
masking options
c9b6131
@sarthakpati
added new function to calculate std-dev
271ba44
@sarthakpati
iterator added
f0b4759
@sarthakpati
using mask to iterate
419c89b
@sarthakpati
finished the std-dev calculator and using it for "-m 1"
82182a3
@sarthakpati
getting 10th percentile
47bedce
@sarthakpati
mask calculation '1' completed
727d523
@sarthakpati
mask calculation type '2' finished
0341740
@sarthakpati
removed redundant code
3fac462
@sarthakpati
added sanity check
e089fb2
@sarthakpati
added implementation to get the mean curve
85d2a0a
@sarthakpati
updated sanity checks and re-using older implementation for mean
f20d6df
@sarthakpati
using the output resolution provided by user
ba37561
@sarthakpati
no need for redundant comments
66bccb6
@sarthakpati
some typos fixed
b491840
@sarthakpati
redundant code removed
184bd34
@sarthakpati
redundant code removed
dec1d9e
@sarthakpati sarthakpati marked this pull request as draft October 28, 2020 14:21
@sarthakpati sarthakpati changed the title 1235 Perfusion Alignment fixes Oct 28, 2020
@sarthakpati
Merge branch '1364' of https://github.com/sarthakpati/CaPTk into 1235
fc832e5
@sarthakpati
Merge branch '1364' of https://github.com/sarthakpati/CaPTk into 1235
1532910
@sarthakpati
Merge branch 'master' into 1235
86f076d
@sarthakpati
extra percentage was going up
659641d
@sarthakpati
Merge branch '1235' of https://github.com/sarthakpati/CaPTk into 1235
30bdd6f
@sarthakpati
Merge branch 'master' into 1235
7ef4a7c
@sarthakpati
Merge branch 'master' of https://github.com/CBICA/CaPTk into 1235
9ca652a
@sarthakpati
Merge branch '1235' of https://github.com/sarthakpati/CaPTk into 1235
bdc5c78
@sarthakpati
progress bar is being annoying
4e1b487
@sarthakpati
add option to resample across time
b244c42
@sarthakpati
enable 4th dimension resample
7106a4a
@sarthakpati
this is working as expected
c8cc18f
@sarthakpati
output in correct space
92e1306
@sarthakpati
using input time resolution
ed1c82b
@sarthakpati
ensuring the input time resolution is factored in
557cc0c
@sarthakpati
don't want that
f7fef93
@sarthakpati
cleaned up cli
f86cb78
@sarthakpati
extra masking options not needed
98fae8c
@sarthakpati
no need of the last 2 numbers
9a8692d
@sarthakpati
appropriate changes in interface (cli and gui)
9b6b68a
@sarthakpati sarthakpati marked this pull request as ready for review November 5, 2020 16:16
@sarthakpati sarthakpati merged commit 5883f99 into CBICA:master Nov 6, 2020
@sarthakpati sarthakpati deleted the 1235 branch November 6, 2020 12:12
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Reviewers

@AlexanderGetka-cbica AlexanderGetka-cbica AlexanderGetka-cbica approved these changes

@ashishsingh18 ashishsingh18 Awaiting requested review from ashishsingh18

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@sarthakpati @AlexanderGetka-cbica