0.1.7

What's Changed

• Extracting individual ROI masks by @georgeaidinis in #18
• Renamed niCHARTPipelines -> NiChart_DLMUSE

Changelog (overview):

• Switched from pytorch_v1 to pytorch-2.0.1
• Added a CLI argument for extracting all ROI masks (for the 145 individual MUSE masks)
• Removed duplicate code, moved util functions
• Updated documentation

Full Changelog: 0.1.5...0.1.7

0.1.5

What's Changed

• Integrate nnUNet with ability to run multiple cases in a folder by @ashishsingh18 in #7
• Updated the CLI to accept parameters for the nnUNet models. Additional stuff for packaging etc. by @georgeaidinis in #8
• Reorientation scripts, transposed output .csv, updated dockerfile & speed improvements with torch by @georgeaidinis in #12
• Add github stat collection persistence by @AlexanderGetka-cbica in #14
• Solution to weird artifacts created by DLICV by @georgeaidinis in #16

New Contributors

• @georgeaidinis made their first contribution in #8

Full Changelog: 0.1.0...0.1.5

0.1.0

This is the DeepMRSeg version of the structural pipeline.

What's Changed

• Pass params to pipeline by @ashishsingh18 in #1
• Update readme and add requirements.txt by @ashishsingh18 in #2
• Fix bug in Structural.py by @gurayerus in #3
• Add singularity recipe by @AlexanderGetka-cbica in #4
• Packaging by @ashishsingh18 in #5
• Add dockerfile and update readme by @ashishsingh18 in #6

New Contributors

• @ashishsingh18 made their first contribution in #1
• @gurayerus made their first contribution in #3
• @AlexanderGetka-cbica made their first contribution in #4

Full Changelog: https://github.com/CBICA/niCHARTPipelines/commits/0.1.0