Derived Harmonized Volumes in Age Trends module

[melhemr]

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[melhemr]

@AbdulkadirA There was actually another file that needed to be added to the repository that had the mappings of single volumes that make up derived volumes. I added this file to the scripts by making a series of functions like with MUSE_ROI_Dictionary.csv

[AbdulkadirA]

@melhemr Thanks for the update. I recommend to name the variables that relate to the mapping of single to derived volumes as mapping not dictionary. The derived volumes still appear in the harmonization module. After loading and applying a harmonization model, the variable (MUSE) GM, for instance, can be selected which leads to the app crashing.

[melhemr]

@AbdulkadirA I made so that in the harmonization module, if a DERIVED ROI is selected, it sets the combo box to Right Anterior Cingulate gyrus (the SINGLE ROI that always comes up first), and resets the plot to that ROI as well.

I also changed the name of the single -> derived mapping file to DerivedMUSEMap, and all functions are similarly changed.

The harmonized SINGLE ROI residuals are produced, and the DERIVED ROIs are generated and can be plotted in Age trends.

[melhemr]

@AbdulkadirA I was able to fix the issue with the sum for derived volumes, as well are making sure the combobox only includes SINGLE ROIs, but I have been struggling to fix the problem of what to do if the input in the combobox is not valid. I've tried a few ways, particularly the one I've pushed here, but nothing has worked. Any suggestions?

[AbdulkadirA]

@melhemr See suggestion below.

[melhemr]

@AbdulkadirA I added code to fix #170 as well

[AbdulkadirA]

With pandas==1.3.4 it works. However, at some point the mapping of derived ROIs is printed in the terminal. This is not necessary. Otherwise good to merge.

[AbdulkadirA]

@melhemr Thanks. The derived volumes are calculated and can be added to the data frame.