fix(scripts): update changelog scripts

- remove clean_cda_map_excel and link_synonym_ents_csv scripts since their functionality has been replaced by make_mapping_changelog
- fixes to make_mapping_changelog and make_diff_changelog to fix cypher errors
- changes to make_model_changelog to fix escaping quotes in entity attributes and track previously created entities to prevent duplication
- formatting changes to compare_models and compare_val_set_terms
- update versions of liquichange and bento-mdf dependencies
- changelog scripts now add Changesets with add_changeset method of Changelog.
- update poetry.lock

python/pyproject.toml

@@ -44,7 +44,8 @@ numpy = {version = "^1.23.5", optional = true}
 pandas = {version = "^1.5.2", optional = true}
 spacy = {version = "^3.4.3", optional = true}
 click = {version = "^8.1.3", optional = true}
-liquichange = {version = "^0.1.0", optional = true}
+liquichange = "^0.2.1"
+bento-mdf = "^0.7.2"
 
 [tool.poetry.extras]
 Tools = ["click", "numpy", "pandas", "spacy", "liquichange"]
@@ -59,18 +60,16 @@ sphinx-autoapi = "^2.0.1"
 sphinx-rtd-theme = "^1.1.1"
 python-semantic-release = "^7.33.0"
 pytest-cov = "^4.0.0"
-liquichange = "^0.1.0"
+liquichange = "^0.2.1"
 sphinx = "5.3.0"
 bento-mdf = "^0.7.2"
 
 [tool.poetry.scripts]
-"clean_cda_map_excel" = { reference = "scripts/clean_cda_map_excel.py", type = "file", extras = ["click", "numpy", "pandas"] }
 "compare_models" = { reference = "scripts/compare_models.py", type = "file", extras = ["click", "spacy", "pandas"]}
 "compare_val_set_terms" = { reference = "scripts/compare_val_set_terms.py", type = "file", extras = ["click", "pandas"] }
-"link_synonym_ents_csv" = { reference = "scripts/link_synonym_ents_csv.py", type = "file", extras = ["click"] }
-"make_model_changelog" = {reference = "scripts/make_model_changelog.py", type = "file", extras = ["liquichange"]}
-"make_diff_changelog" = {reference = "scripts/make_diff_changelog.py", type = "file", extras = ["liquichange"]}
-"make_mapping_changelog" = {reference = "scripts/make_mapping_changelog.py", type = "file", extras = ["liquichange"]}
+"make_model_changelog" = {reference = "scripts/make_model_changelog.py", type = "file", extras = ["click", "liquichange"]}
+"make_diff_changelog" = {reference = "scripts/make_diff_changelog.py", type = "file", extras = ["click", "liquichange"]}
+"make_mapping_changelog" = {reference = "scripts/make_mapping_changelog.py", type = "file", extras = ["click", "liquichange"]}
 
 [build-system]
 requires = ["poetry-core"]