Skip to content
This repository has been archived by the owner on Oct 23, 2023. It is now read-only.

Issues: CCBR/Pipeliner

24 Open 69 Closed
24 Open 69 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

groups.tab: Add validation test bug enhancement
#478 opened Dec 29, 2022 by kopardev
RNASeq DE naming error due to "." in sample
#476 opened Sep 8, 2022 by slsevilla
1
Use msigdb for pathway analysis; perform additional analysis on specific db/pathway
#474 opened Aug 8, 2022 by slsevilla
1
Parse GTF on the fly RNASeq
#462 opened Oct 29, 2020 by kopardev
1
Move to STAR version >= 2.7.6a RNASeq
#461 opened Oct 29, 2020 by kopardev
1
Improvement to differential expression html reports RNASeq
#459 opened Sep 3, 2020 by tovahmarkowitz
Calculate actual mean fragment length for PE data. Use for sicer PE. ChIPSeq
#458 opened Aug 31, 2020 by tovahmarkowitz
Fix error with PE duplicate removal. Incorporate Vishal's code. ChIPSeq
#457 opened Aug 31, 2020 by tovahmarkowitz
miRSeq DE miRSeq
#455 opened Jun 26, 2020 by wong-nw
@wong-nw
scrnaDE scRNASeq
#454 opened Jun 25, 2020 by wong-nw
@wong-nw
scrnaQC_Reports.R: New Rmd for all SingleR annotations scRNASeq
#453 opened Jun 25, 2020 by wong-nw
@wong-nw
scrnaQC.R: Adjust image title and axis-label size scRNASeq
#452 opened Jun 25, 2020 by wong-nw
@wong-nw
Fix glitches with DiffBind analysis ChIPSeq in progress
#442 opened Apr 10, 2020 by tovahmarkowitz
ChIPQC ChIPSeq
#411 opened Mar 8, 2019 by tovahmarkowitz
improve IDR ChIPSeq
#410 opened Mar 8, 2019 by tovahmarkowitz
Delta-delta in contrasts.tab backlog enhancement
#409 opened Mar 8, 2019 by wong-nw
@skchronicles
1
Excel-friendly DEG Result backlog enhancement Feature Request RNASeq
#390 opened Dec 18, 2018 by skchronicles 4.0
@skchronicles
1
fix bam headers ChIPSeq
#384 opened Dec 3, 2018 by tovahmarkowitz
@tovahmarkowitz
Documentation ChIPSeq
#383 opened Dec 3, 2018 by tovahmarkowitz
@tovahmarkowitz
Add SV calling tools exome-seq
#369 opened Nov 14, 2018 by mtandon09 4.0
@mtandon09
Create test datasets ChIPSeq exome-seq RNASeq scRNASeq
#367 opened Nov 14, 2018 by kopardev
@kopardev @jlac
Automate testing enhancement Feature Request
#364 opened Nov 14, 2018 by kopardev
@skchronicles
GSEA enhancement in progress RNASeq
#329 opened Aug 8, 2018 by kopardev
@skchronicles
Covariates backlog enhancement RNASeq
#325 opened Aug 8, 2018 by kopardev
@kopardev @skchronicles
ProTip! no:milestone will show everything without a milestone.