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Setup of quarto docs #59

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merged 9 commits into from
Apr 4, 2024
Merged

Setup of quarto docs #59

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21cae12
Setup of quarto docs
gvegayon Apr 3, 2024
fa11b2f
Adding dependencies to run quarto
gvegayon Apr 3, 2024
1676afc
Right path for poetry to run
gvegayon Apr 3, 2024
8b9aff6
Adding badge for quarto documents
gvegayon Apr 3, 2024
3320b0a
Pip install a single call
gvegayon Apr 3, 2024
cf5c454
only to PRs to main
gvegayon Apr 4, 2024
d434cc9
Update .github/workflows/docs.yaml
gvegayon Apr 4, 2024
72d5bad
Merge branch 'main' into gvegayon/documentation/58-ci-for-rendering-q…
gvegayon Apr 4, 2024
b8ff399
fix spacing
dylanhmorris Apr 4, 2024
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41 changes: 41 additions & 0 deletions .github/workflows/docs.yaml
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name: Quarto documents

on:
pull_request:
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branches: [main]
push:
branches: [main]

jobs:
render-docs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4

- uses: quarto-dev/quarto-actions/setup@v2

- uses: actions/setup-python@v5
with:
python-version: "3.12"

- name: cache poetry
uses: actions/cache@v4
with:
path: ~/.local
key: ${{ runner.os }}-poetry

- name: install poetry
run: pip install poetry

- name: install package
run: poetry install -C model

- name: installing other dependencies
run: poetry run -C model pip install pyyaml nbclient nbformat

- name: Render documents
run: |
cd model
for file in $(find docs -name '*.qmd'); do
poetry run quarto render $file
done
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4 changes: 3 additions & 1 deletion README.md
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Expand Up @@ -2,11 +2,13 @@

⚠️ This is a work in progress ⚠️

[![Pre-commit](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/pre-commit.yaml/badge.svg)](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/pre-commit.yaml)
[![Pre-commit](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/pre-commit.yaml/badge.svg)](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/pre-commit
[![installation and testing model](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/model.yaml/badge.svg)](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/model.yaml)
[![installation and testing pipeline](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/pipeline.yaml/badge.svg)](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/pipeline.yaml)
[![Docs: model](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/website.yaml/badge.svg)](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/website.yaml)
[![codecov (model)](https://codecov.io/gh/CDCgov/multisignal-epi-inference/graph/badge.svg?token=7Z06HOMYR1)](https://codecov.io/gh/CDCgov/multisignal-epi-inference)
[![Quarto documents](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/docs.yaml/badge.svg)](https://github.com/CDCgov/multisignal-epi-inference/actions/workflows/docs.yaml)


This repo hosts the multisignal (*a.k.a.* signal fusion) renewal project: an internal forecasting model that leverages multiple data sources for enhancing epidemiological modeling of infectious disease outbreaks.

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