citation in documentation update

CGAT-Group · Jan 13, 2022 · aee91d6 · aee91d6
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diff --git a/docs/build/doctrees/contents.doctree b/docs/build/doctrees/contents.doctree
diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
diff --git a/docs/build/doctrees/further-information/about.doctree b/docs/build/doctrees/further-information/about.doctree
diff --git a/docs/build/html/_sources/contents.rst.txt b/docs/build/html/_sources/contents.rst.txt
@@ -19,7 +19,7 @@ What is DICAST?
 .. _Snakemake: https://snakemake.github.io/
 .. _Docker: https://www.docker.com/
 .. _Dockerhub: https://hub.docker.com/repository/docker/dicastproj/dicast
-.. _bioRxiv: https://www.biorxiv.org/
+.. _bioRxiv: https://doi.org/10.1101/2022.01.05.475067
 
 DICAST is a collection of alternative splicing event detection tools for analyzing RNA-Seq data. DICAST runs on `Snakemake`_ pipelines and relies on `Docker`_ based containerization. For easy installation and maintenance, we provide docker containers for every integrated tool at `Dockerhub`_
 
@@ -35,7 +35,7 @@ When should I use DICAST?
 
 How do I cite DICAST?
 =====================
-DICAST is currently hosted on `bioRxiv`_, at this link <notsubmitted-yet>.
+DICAST is currently hosted on `bioRxiv`_, at this link `<https://doi.org/10.1101/2022.01.05.475067>`_.
 
 
 

diff --git a/docs/build/html/_sources/further-information/about.rst.txt b/docs/build/html/_sources/further-information/about.rst.txt
@@ -12,7 +12,8 @@ With contributions from Tim Faro, Fanny Roessler, Johannes Kersting, Alexander D
 Citation
 ########
 
-If you use DICAST please cite:
+If you use DICAST please cite the `preprint <https://doi.org/10.1101/2022.01.05.475067>`_
+   |Fenn, A.M., Tsoy, O., Faro, T., Roessler, F., Dietrich, A., Kersting, J., Louadi, Z., Lio, C.T., Voelker, U., Baumbach, J. and Kacprowski, T., 2022. Alternative splicing analysis benchmark with DICAST. bioRxiv.
  
 
 Acknowledgments

diff --git a/docs/build/html/contents.html b/docs/build/html/contents.html
@@ -253,7 +253,7 @@ <h1>When should I use DICAST?<a class="headerlink" href="#when-should-i-use-dica
 </div>
 <div class="section" id="how-do-i-cite-dicast">
 <h1>How do I cite DICAST?<a class="headerlink" href="#how-do-i-cite-dicast" title="Permalink to this headline">¶</a></h1>
-<p>DICAST is currently hosted on <a class="reference external" href="https://www.biorxiv.org/">bioRxiv</a>, at this link &lt;notsubmitted-yet&gt;.</p>
+<p>DICAST is currently hosted on <a class="reference external" href="https://doi.org/10.1101/2022.01.05.475067">bioRxiv</a>, at this link <a class="reference external" href="https://doi.org/10.1101/2022.01.05.475067">https://doi.org/10.1101/2022.01.05.475067</a>.</p>
 <div class="toctree-wrapper compound">
 </div>
 <div class="toctree-wrapper compound">

diff --git a/docs/build/html/further-information/about.html b/docs/build/html/further-information/about.html
@@ -237,7 +237,10 @@ <h2>Development<a class="headerlink" href="#development" title="Permalink to thi
 </div>
 <div class="section" id="citation">
 <h2>Citation<a class="headerlink" href="#citation" title="Permalink to this headline">¶</a></h2>
-<p>If you use DICAST please cite:</p>
+<dl class="docutils">
+<dt>If you use DICAST please cite the <a class="reference external" href="https://doi.org/10.1101/2022.01.05.475067">preprint</a></dt>
+<dd><a href="#id1"><span class="problematic" id="id2">|</span></a>Fenn, A.M., Tsoy, O., Faro, T., Roessler, F., Dietrich, A., Kersting, J., Louadi, Z., Lio, C.T., Voelker, U., Baumbach, J. and Kacprowski, T., 2022. Alternative splicing analysis benchmark with DICAST. bioRxiv.</dd>
+</dl>
 </div>
 <div class="section" id="acknowledgments">
 <h2>Acknowledgments<a class="headerlink" href="#acknowledgments" title="Permalink to this headline">¶</a></h2>

diff --git a/docs/build/html/searchindex.js b/docs/build/html/searchindex.js
diff --git a/docs/source/contents.rst b/docs/source/contents.rst
@@ -19,7 +19,7 @@ What is DICAST?
 .. _Snakemake: https://snakemake.github.io/
 .. _Docker: https://www.docker.com/
 .. _Dockerhub: https://hub.docker.com/repository/docker/dicastproj/dicast
-.. _bioRxiv: https://www.biorxiv.org/
+.. _bioRxiv: https://doi.org/10.1101/2022.01.05.475067
 
 DICAST is a collection of alternative splicing event detection tools for analyzing RNA-Seq data. DICAST runs on `Snakemake`_ pipelines and relies on `Docker`_ based containerization. For easy installation and maintenance, we provide docker containers for every integrated tool at `Dockerhub`_
 
@@ -35,7 +35,7 @@ When should I use DICAST?
 
 How do I cite DICAST?
 =====================
-DICAST is currently hosted on `bioRxiv`_, at this link <notsubmitted-yet>.
+DICAST is currently hosted on `bioRxiv`_, at this link `<https://doi.org/10.1101/2022.01.05.475067>`_.
 
 
 

diff --git a/docs/source/further-information/about.rst b/docs/source/further-information/about.rst
@@ -12,7 +12,8 @@ With contributions from Tim Faro, Fanny Roessler, Johannes Kersting, Alexander D
 Citation
 ########
 
-If you use DICAST please cite:
+If you use DICAST please cite the `preprint <https://doi.org/10.1101/2022.01.05.475067>`_
+   |Fenn, A.M., Tsoy, O., Faro, T., Roessler, F., Dietrich, A., Kersting, J., Louadi, Z., Lio, C.T., Voelker, U., Baumbach, J. and Kacprowski, T., 2022. Alternative splicing analysis benchmark with DICAST. bioRxiv.
  
 
 Acknowledgments