Code is obsolete. It is now incorporated in ChessAnalysisPipeline

Creating conda environment

• Use the file environment.yml to create the environment (note: you can change the name of the environment from "tomopy" to another name, but then you will need to use that name in the following commands when activating environment)

   conda env create -f environment.yml
  

• The new environment, tomopy should be present

   conda info --envs
  

• Activate the new environment

   conda activate tomopy
   
   depending on your conda installation, it may be necessary to use the alternative:
   source activate tomopy
  

• then use commandline and run

    python tomo.py
  

• when finished, deactivate the environment

    conda deactivate
  

• should something go wrong, the environment can be removed using

    conda remove --name tomopy --all