fix to carry over weirs

[krober10nd]

• make sure supplementary boundary condition array data are column arrays.

[WPringle]

Are the original arrays guaranteed to be row vectors? Why we have a discrepancy here?

[krober10nd]

with all the manipulation in the plus perhaps they become rows somewhere there.

[WPringle]

Not sure about that. What is the canonical format that we are using? (row or column vector)

[krober10nd]

everything should be column vectors.

[WPringle]

Yeah so for some reason you are saying that originally "obj1" has them as a row vector. Was it like this before the call to function? Or did it get changed during plus function?

Need to see where this happened and prevent it there instead.

[krober10nd]

Not sure. I don't see why it's a big deal. Just make sure they're columns by doing (:) when carrying over.

[WPringle]

Yeah but the transpose operator may make the shape invalid for another test case. Perhaps it was just wrong in your original mesh

[krober10nd]

No, it wasn't wrong it my original mesh. It should be column vectors so this PR forces that to be true. What other operations are your referring to that would make it so-called "invalid"?

[WPringle]

You are using transpose operator to force a row vector to a column vector. But it may already be a column vector. So the PR doesn't necessarily force it to be a column vector (it forces a transpose).

[krober10nd]

That's true. So it needs to use a (:).

[krober10nd]

Try to plus m4 into m2

m3 = plus(m4,m2,'arb',{'ds',0});

both m4 and m2 have weirs. Specifically m2 the parent has 6 weirs, and m4, the child, has one.

These meshes were created using all the available tools here in om.

edit: I'll send you the file via email. it's too big to upload

[krober10nd]

For example in the case I sent to you via email, the logical array jj is 385 entries long

   obj.bd.ibtype = [obj.bd.ibtype ; obj1.bd.ibtype(jj)];

and obj.bd.ibtype is a scalar. When indexing into obj.bd.ibtype(jj) it produces a row array. This obviously does not concatenate.

Perhaps this case was not previously encountered in our works.

[WPringle]

Keith, so it seems that make_bc is making the ibtype and nvell arrays on the fly so they are populated as row arrays, i.e. dimensions of [1 x NBOU].
This does happen to be consistent with nbvv having dimensions of [max(nvell) x NBOU].

So the solution is to change the semi-colon when concatenating to just a blank space or a comma rather than transposing.

It so happens that the shape of ibtype and nvell doesn't matter for writing out the mesh. But when reading in a mesh from fort.14 it was assumed to be dimensions [NBOU x 1]. So I made an edit for that too.

[krober10nd]

Yes I had read in the base mesh from a fort14 so perhaps that why this happened. Did the case I sent now work?

[krober10nd]

Okay, I ran the case, everything works. I agree the fix makes sense. Lets merge this.