CHRF_Paratyphi_scripts

Scripts and color scheme used in the Paratype article, Tanmoy AM et al. (on medRxiv).

Name		Name	Last commit message	Last commit date
Latest commit History 12 Commits
Analysis_Codes.txt		Analysis_Codes.txt
Count_region_specific_Mutation.py		Count_region_specific_Mutation.py
Count_region_specific_SNPs.py		Count_region_specific_SNPs.py
Extract_position_specific_SNP.py		Extract_position_specific_SNP.py
Filter_SNP_in_regions.py		Filter_SNP_in_regions.py
Filter_SNP_quality.py		Filter_SNP_quality.py
Paratype_Color_Scheme.txt		Paratype_Color_Scheme.txt
Parse_plasmidfinder-by-contig_results.py		Parse_plasmidfinder-by-contig_results.py
Parse_resfinder-by-contig_results.py		Parse_resfinder-by-contig_results.py
PtyphiAKU12601.phage_repeat_variation_final.txt		PtyphiAKU12601.phage_repeat_variation_final.txt
README.md		README.md
Rearrange_parsed-finder-results.py		Rearrange_parsed-finder-results.py
fasta2phylip.py		fasta2phylip.py

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