Skip: Update all non-major dependencies (merge commit)

Merge branch 'renovate/all-minor-patch' into 'main'
* Skip: Update dependency test/setuptools to v70

* Fix issues raised by dependency update

* Skip: Update all non-major dependencies

See merge request https://gitlab.ci.csc.fi/sds-dev/sd-submit/metadata-submitter/-/merge_requests/866

Co-authored-by: renovate-bot <group183_bot1@noreply.gitlab.ci.csc.fi>
Co-authored-by: Joonatan Mäkinen <joonatan.makinen@csc.fi>
Merged by Joonatan Mäkinen <jmakine@csc.fi>

.github/workflows/docs.yml

@@ -13,7 +13,7 @@ jobs:
 
     steps:
       - uses: actions/checkout@v4
-      - uses: rojopolis/spellcheck-github-actions@0.36.0
+      - uses: rojopolis/spellcheck-github-actions@0.38.0
         name: Spellcheck
         with:
           config_path: .pyspelling.yml

metadata_backend/services/metax_mapper.py

@@ -513,6 +513,8 @@ def _map_is_output_of(self, study: dict[str, Any]) -> None:
         LOG.info("Mapping study for related datasets")
         LOG.debug(study)
 
+        name = ""
+
         for obj in self.datacite_data["metadataObjects"]:
             if obj["schema"] == "study":
                 name = obj["tags"]["displayTitle"]

pyproject.toml

@@ -23,11 +23,11 @@ classifiers = [
 
 [project.optional-dependencies]
 test = [
-    "coverage==7.4.4",
+    "coverage==7.5.3",
     "pytest==8.2.2",
     "pytest-cov==5.0.0",
-    "pytest-xdist==3.5.0",
-    "tox==4.14.2",
+    "pytest-xdist==3.6.1",
+    "tox==4.15.1",
     "setuptools==70.1.0",
 ]
 docs = [

requirements-dev.txt

@@ -6,7 +6,7 @@
 #
 aiofiles==23.2.1
     # via -r requirements-dev.in
-aiohttp==3.9.4
+aiohttp==3.9.5
     # via
     #   -r requirements.txt
     #   aiohttp-session
@@ -22,31 +22,31 @@ amqpstorm==2.10.7
     # via
     #   -r requirements-dev.in
     #   -r requirements.txt
-astroid==3.1.0
+astroid==3.2.2
     # via pylint
 attrs==23.2.0
     # via
     #   -r requirements.txt
     #   aiohttp
     #   jsonschema
     #   referencing
-authlib==1.3.0
+authlib==1.3.1
     # via -r requirements-dev.in
-babel==2.14.0
+babel==2.15.0
     # via sphinx
-bandit==1.7.8
+bandit==1.7.9
     # via -r requirements-dev.in
 beautifulsoup4==4.12.3
     # via pyspelling
-black==24.4.0
+black==24.4.2
     # via -r requirements-dev.in
 bracex==2.4
     # via wcmatch
 build==1.2.1
     # via pip-tools
 cachetools==5.3.3
     # via tox
-certifi==2024.2.2
+certifi==2024.6.2
     # via
     #   -r requirements-dev.in
     #   -r requirements.txt
@@ -69,15 +69,15 @@ click==8.1.7
     #   pip-tools
 colorama==0.4.6
     # via tox
-coverage[toml]==7.4.4
+coverage[toml]==7.5.3
     # via pytest-cov
-cryptography==42.0.5
+cryptography==42.0.8
     # via
     #   -r requirements.txt
     #   authlib
     #   cryptojwt
     #   pyopenssl
-cryptojwt==1.9.0
+cryptojwt==1.9.2
     # via
     #   -r requirements.txt
     #   idpyoidc
@@ -101,13 +101,13 @@ elementpath==4.4.0
     #   xmlschema
 execnet==2.1.1
     # via pytest-xdist
-filelock==3.13.4
+filelock==3.15.3
     # via
     #   -r requirements.txt
     #   idpyoidc
     #   tox
     #   virtualenv
-flake8==7.0.0
+flake8==7.1.0
     # via -r requirements-dev.in
 frozenlist==1.4.1
     # via
@@ -120,14 +120,14 @@ honcho==1.1.0
     # via -r requirements-dev.in
 html5lib==1.1
     # via pyspelling
-identify==2.5.35
+identify==2.5.36
     # via pre-commit
 idna==3.7
     # via
     #   -r requirements.txt
     #   requests
     #   yarl
-idpyoidc==4.0.0
+idpyoidc==4.1.0
     # via -r requirements.txt
 imagesize==1.4.1
     # via sphinx
@@ -142,13 +142,13 @@ jinja2==3.1.4
     #   -r requirements.txt
     #   idpyoidc
     #   sphinx
-jsonschema==4.21.1
+jsonschema==4.22.0
     # via -r requirements.txt
 jsonschema-specifications==2023.12.1
     # via
     #   -r requirements.txt
     #   jsonschema
-lxml==5.2.1
+lxml==5.2.2
     # via pyspelling
 markdown==3.6
     # via pyspelling
@@ -173,15 +173,15 @@ multidict==6.0.5
     #   -r requirements.txt
     #   aiohttp
     #   yarl
-mypy==1.9.0
+mypy==1.10.0
     # via -r requirements-dev.in
 mypy-extensions==1.0.0
     # via
     #   black
     #   mypy
-nodeenv==1.8.0
+nodeenv==1.9.1
     # via pre-commit
-packaging==24.0
+packaging==24.1
     # via
     #   -r requirements.txt
     #   black
@@ -201,33 +201,33 @@ pbr==6.0.0
     # via stevedore
 pip-tools==7.4.1
     # via -r requirements-dev.in
-platformdirs==4.2.0
+platformdirs==4.2.2
     # via
     #   black
     #   pylint
     #   tox
     #   virtualenv
-pluggy==1.4.0
+pluggy==1.5.0
     # via
     #   pytest
     #   tox
-pre-commit==3.7.0
+pre-commit==3.7.1
     # via -r requirements-dev.in
-pycodestyle==2.11.1
+pycodestyle==2.12.0
     # via flake8
 pycparser==2.22
     # via
     #   -r requirements.txt
     #   cffi
 pyflakes==3.2.0
     # via flake8
-pygments==2.17.2
+pygments==2.18.0
     # via
     #   rich
     #   sphinx
-pylint==3.1.0
+pylint==3.2.3
     # via -r requirements-dev.in
-pymongo==4.6.3
+pymongo==4.7.3
     # via
     #   -r requirements.txt
     #   motor
@@ -237,23 +237,23 @@ pyopenssl==24.1.0
     #   idpyoidc
 pyproject-api==1.6.1
     # via tox
-pyproject-hooks==1.0.0
+pyproject-hooks==1.1.0
     # via
     #   build
     #   pip-tools
 pyspelling==2.10
     # via -r requirements-dev.in
-pytest==8.1.1
+pytest==8.2.2
     # via
     #   -r requirements-dev.in
     #   pytest-asyncio
     #   pytest-cov
     #   pytest-xdist
-pytest-asyncio==0.23.6
+pytest-asyncio==0.23.7
     # via -r requirements-dev.in
 pytest-cov==5.0.0
     # via -r requirements-dev.in
-pytest-xdist==3.5.0
+pytest-xdist==3.6.1
     # via -r requirements-dev.in
 python-dateutil==2.9.0.post0
     # via -r requirements.txt
@@ -266,7 +266,7 @@ pyyaml==6.0.1
     #   pre-commit
     #   pyspelling
     #   responses
-referencing==0.34.0
+referencing==0.35.1
     # via
     #   -r requirements.txt
     #   jsonschema
@@ -277,13 +277,13 @@ requests==2.31.0
     #   cryptojwt
     #   responses
     #   sphinx
-responses==0.25.0
+responses==0.25.3
     # via
     #   -r requirements.txt
     #   idpyoidc
 rich==13.7.1
     # via bandit
-rpds-py==0.18.0
+rpds-py==0.18.1
     # via
     #   -r requirements.txt
     #   jsonschema
@@ -299,7 +299,7 @@ soupsieve==2.5
     # via
     #   beautifulsoup4
     #   pyspelling
-sphinx==7.2.6
+sphinx==7.3.7
     # via
     #   -r requirements-dev.in
     #   sphinx-rtd-theme
@@ -322,43 +322,43 @@ sphinxcontrib-serializinghtml==1.1.10
     # via sphinx
 stevedore==5.2.0
     # via bandit
-tomlkit==0.12.4
+tomlkit==0.12.5
     # via pylint
-tox==4.14.2
+tox==4.15.1
     # via -r requirements-dev.in
 types-python-dateutil==2.9.0.20240316
     # via -r requirements-dev.in
-types-requests==2.31.0.20240406
+types-requests==2.32.0.20240602
     # via -r requirements-dev.in
-types-ujson==5.9.0.0
+types-ujson==5.10.0.20240515
     # via -r requirements-dev.in
-typing-extensions==4.11.0
+typing-extensions==4.12.2
     # via
     #   -r requirements.txt
     #   mypy
-ujson==5.9.0
+ujson==5.10.0
     # via -r requirements.txt
-urllib3==2.2.1
+urllib3==2.2.2
     # via
     #   -r requirements.txt
     #   requests
     #   responses
     #   types-requests
 uvloop==0.19.0
     # via -r requirements.txt
-virtualenv==20.25.1
+virtualenv==20.26.2
     # via
     #   pre-commit
     #   tox
 vulture==2.11
     # via -r requirements-dev.in
-wcmatch==8.5.1
+wcmatch==8.5.2
     # via pyspelling
 webencodings==0.5.1
     # via html5lib
 wheel==0.43.0
     # via pip-tools
-xmlschema==3.2.1
+xmlschema==3.3.1
     # via -r requirements.txt
 yarl==1.9.4
     # via