add JuliaCall example #11
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| name: CI | |
| # Controls when the action will run. Triggers the workflow on push or pull request | |
| # events but only for the master branch | |
| on: | |
| push: | |
| branches: [ main, master] | |
| pull_request: | |
| branches: [ main, master] | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| env: | |
| CC: mpicc | |
| FC: mpifort | |
| CXX: mpicxx | |
| CPPFLAGS: "-I/usr/include -I/usr/local/include" | |
| CIME_TEST_PLATFORM: ubuntu-latest | |
| # Versions of all dependencies can be updated here | |
| PNETCDF_VERSION: pnetcdf-1.12.3 | |
| NETCDF_FORTRAN_VERSION: v4.6.0 | |
| MCT_VERSION: MCT_2.11.0 | |
| PARALLELIO_VERSION: pio2_5_10 | |
| NETCDF_C_PATH: /usr | |
| NETCDF_FORTRAN_PATH: ${HOME}/netcdf-fortran | |
| PNETCDF_PATH: ${HOME}/pnetcdf | |
| CIME_MODEL: cesm | |
| CIME_DRIVER: mct | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - id: load-env | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libxml2-utils pylint wget gfortran openmpi-bin netcdf-bin libopenmpi-dev cmake libnetcdf-dev | |
| # - name: Set up Python ${{ matrix.python-version }} | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # cache: 'pip' | |
| # - name: pip install | |
| # run: pip install PyYAML | |
| - name: cache pnetcdf | |
| id: cache-pnetcdf | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/pnetcdf | |
| key: ${{ runner.os }}-${{ env.PNETCDF_VERSION}}-pnetcdf-redo | |
| - name: pnetcdf build | |
| if: steps.cache-pnetcdf.outputs.cache-hit != 'true' | |
| run: | | |
| wget https://parallel-netcdf.github.io/Release/${{ env.PNETCDF_VERSION }}.tar.gz | |
| tar -xzvf ${{ env.PNETCDF_VERSION }}.tar.gz | |
| ls -l | |
| pushd ${{ env.PNETCDF_VERSION }} | |
| ./configure --prefix=$HOME/pnetcdf --enable-shared --disable-cxx | |
| make | |
| make install | |
| popd | |
| - name: Cache netcdf-fortran | |
| id: cache-netcdf-fortran | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/netcdf-fortran | |
| key: ${{ runner.os }}-${{ env.NETCDF_FORTRAN_VERSION }}-netcdf-fortran-redo | |
| - name: netcdf fortran build | |
| if: steps.cache-netcdf-fortran.outputs.cache-hit != 'true' | |
| run: | | |
| wget https://github.com/Unidata/netcdf-fortran/archive/${{ env.NETCDF_FORTRAN_VERSION }}.tar.gz | |
| tar -xzvf ${{ env.NETCDF_FORTRAN_VERSION }}.tar.gz | |
| ls -l | |
| pushd netcdf-fortran-* | |
| ./configure --prefix=$HOME/netcdf-fortran | |
| make | |
| make install | |
| - name: link netcdf-c to netcdf-fortran path | |
| # link netcdf c library here to simplify build | |
| run: | | |
| pushd ${{ env.NETCDF_FORTRAN_PATH }}/include | |
| ln -fs /usr/include/*netcdf* . | |
| pushd ${{ env.NETCDF_FORTRAN_PATH }}/lib | |
| clibdir=`nc-config --libdir` | |
| ln -fs $clibdir/lib* . | |
| sudo ln -s $HOME/pnetcdf/lib/pkgconfig/pnetcdf.pc /usr/lib/pkgconfig | |
| sudo ln -s $HOME/netcdf-fortran/lib/pkgconfig/netcdf-fortran.pc /usr/lib/pkgconfig | |
| # The following can be used to ssh to the testnode for debugging | |
| # see https://github.com/mxschmitt/action-tmate for details | |
| # - name: Setup tmate session | |
| # uses: mxschmitt/action-tmate@v3 | |
| - uses: actions/checkout@v4 | |
| - name: build eCLM | |
| run: | | |
| # User-specific variables | |
| ls -al | |
| BUILD_DIR="bld" | |
| INSTALL_DIR="eclm" | |
| # Run cmake | |
| cmake -S src -B "$BUILD_DIR" \ | |
| -DCMAKE_INSTALL_PREFIX="$INSTALL_DIR" \ | |
| -DCMAKE_C_COMPILER=mpicc \ | |
| -DCMAKE_Fortran_FLAGS="-fallow-argument-mismatch -fallow-invalid-boz" \ | |
| -DCMAKE_Fortran_COMPILER=mpifort | |
| cd bld | |
| make -j${nproc} | |
| ls -al | |
| ls -al eclm | |
| # - name: Cache inputdata | |
| # if: ${{ ! env.ACT }} | |
| # uses: actions/cache@v3 | |
| # with: | |
| # path: $HOME/cesm/inputdata | |
| # key: inputdata | |
| # the following can be used by developers to login to the github server in case of errors | |
| # see https://github.com/marketplace/actions/debugging-with-tmate for further details | |
| # - name: Setup tmate session | |
| # if: ${{ failure() }} | |
| # uses: mxschmitt/action-tmate@v3 |