FooDMe is a reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.
FooDMe2 is a complete re-write of FooDMe with improved capabilities and portability. You can try it out and give your feedback using the link above.
Support for FooDMe will continue until FooDMe2 reaches enough maturity for a stable release.
The documentation for this workflow is hosted on our homepage. If you use this workflow for research, you can cite this repo using the DOI above.
This workflow support snakemake´s standardized usage and is referenced in the snakemake workflows catalog.