Skip to content

Commit

Permalink
Update verify_blast.md
Browse files Browse the repository at this point in the history
  • Loading branch information
gregdenay committed Jun 17, 2024
1 parent a2d29fa commit a0d5400
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions docs/recipes/verify_blast.md
Original file line number Diff line number Diff line change
Expand Up @@ -83,10 +83,10 @@ One has to keep in mind that different branches of the taxonomy can have a wildl
so it can greatly simplify things first normalize to taxonomy for such an approach:

``` py
norm = tax.filterRanks(inplace=False) # ()!
norm = tax.filterRanks(inplace=False) # (1)!

distances = []
for n in nodes: # (5)!
for n in nodes: # (2)!
distances.append(
[norm.distance(n.taxid, e) for e in expected]
)
Expand Down

0 comments on commit a0d5400

Please sign in to comment.