Update internal links to ReadTheDocs

source/build-from-last-year.rst

@@ -50,7 +50,7 @@ Building from Last Year
 
 8.  If it is not already installed, download and install the wiki reset script::
 
-        sudo wget -O /usr/local/sbin/reset-wiki https://dynamicshjc.case.edu/~vbox/biol300/_downloads/reset-wiki
+        sudo wget -O /usr/local/sbin/reset-wiki https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/reset-wiki
 
     Set the MySQL password inside the script::
 

source/build-from-scratch/config-backups.rst

@@ -13,7 +13,7 @@ Configure Automatic Backup
 
 3.  Download and install the backup script::
 
-        sudo wget -O /usr/local/sbin/backup-wiki https://dynamicshjc.case.edu/~vbox/biol300/_downloads/backup-wiki
+        sudo wget -O /usr/local/sbin/backup-wiki https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/backup-wiki
 
     Set the MySQL password inside the script::
 

source/build-from-scratch/config-web-server.rst

@@ -38,7 +38,7 @@ Configure Web Server with HTTPS
 
 6.  Download and install the ``check-ssl-cert-expiration`` script::
 
-        sudo wget -O /usr/local/sbin/check-ssl-cert-expiration https://dynamicshjc.case.edu/~vbox/biol300/_downloads/check-ssl-cert-expiration
+        sudo wget -O /usr/local/sbin/check-ssl-cert-expiration https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/check-ssl-cert-expiration
         sudo chmod +x /usr/local/sbin/check-ssl-cert-expiration
 
     The script looks for the shared folder set up in step 2 and prints the
@@ -63,7 +63,7 @@ Configure Web Server with HTTPS
     a custom Apache configuration file for handling SSL certificates::
 
         sudo a2dissite 000-default default-ssl
-        sudo wget -O /etc/apache2/sites-available/smart-ssl.conf https://dynamicshjc.case.edu/~vbox/biol300/_downloads/smart-ssl.conf
+        sudo wget -O /etc/apache2/sites-available/smart-ssl.conf https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/smart-ssl.conf
         sudo a2enmod rewrite ssl
         sudo a2ensite smart-ssl
         sudo apache2ctl restart
@@ -102,7 +102,7 @@ Configure Web Server with HTTPS
 10. Discourage bots, such as Google's web crawler, from visiting some parts of
     the site. Download and install ``robots.txt``::
 
-        wget -O /var/www/html/robots.txt https://dynamicshjc.case.edu/~vbox/biol300/_downloads/robots.txt
+        wget -O /var/www/html/robots.txt https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/robots.txt
 
     If you are curious about the contents of ``robots.txt``, you can view it
     here:

source/build-from-scratch/copy-contents.rst

@@ -152,7 +152,7 @@ Copy Old Wiki Contents
     of images and files. This includes the wiki logo, favicon, and figures from
     benchmark exemplars::
 
-        wget -P ~ https://dynamicshjc.case.edu/~vbox/biol300/_downloads/BIOL-300-Files-to-Import.tar.bz2
+        wget -P ~ https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/BIOL-300-Files-to-Import.tar.bz2
         tar -xjf ~/BIOL-300-Files-to-Import.tar.bz2 -C ~
         php /var/www/mediawiki/maintenance/importImages.php --user=Hjc ~/BIOL-300-Files-to-Import
         sudo apache2ctl restart

source/build-from-scratch/install-django.rst

@@ -103,7 +103,7 @@ Install Django
 
 12. Download and install a custom Apache configuration file for Django::
 
-        sudo wget -O /etc/apache2/conf-available/django.conf https://dynamicshjc.case.edu/~vbox/biol300/_downloads/django.conf
+        sudo wget -O /etc/apache2/conf-available/django.conf https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/django.conf
         sudo a2enconf django
         sudo apache2ctl restart
 

source/build-from-scratch/install-extensions.rst

@@ -157,7 +157,7 @@ Install MediaWiki Extensions
 
 6.  Download and install the CAS (Single Sign-On) configuration file::
 
-        wget -O /var/www/mediawiki/extensions/CASAuth/CASAuthSettings.php https://dynamicshjc.case.edu/~vbox/biol300/_downloads/CASAuthSettings.php
+        wget -O /var/www/mediawiki/extensions/CASAuth/CASAuthSettings.php https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/CASAuthSettings.php
 
     Randomize the secret key inside the configuration file::
 
@@ -200,7 +200,7 @@ Install MediaWiki Extensions
     Customizing the mobile site navigation menu by downloading a patch file and
     applying it::
 
-        wget -O /var/www/mediawiki/extensions/MobileFrontend/MobileFrontend_customize-icons.patch https://dynamicshjc.case.edu/~vbox/biol300/_downloads/MobileFrontend_customize-icons.patch
+        wget -O /var/www/mediawiki/extensions/MobileFrontend/MobileFrontend_customize-icons.patch https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/MobileFrontend_customize-icons.patch
         patch -d /var/www/mediawiki/extensions/MobileFrontend < /var/www/mediawiki/extensions/MobileFrontend/MobileFrontend_customize-icons.patch
 
     If you are curious about the contents of the patch file, you can view it
@@ -234,7 +234,7 @@ Install MediaWiki Extensions
 
     Download a patch file and apply it::
 
-        wget -O /var/www/mediawiki/extensions/NewArticleTemplate/NewArticleTemplate_always-use-subpage-template.patch https://dynamicshjc.case.edu/~vbox/biol300/_downloads/NewArticleTemplate_always-use-subpage-template.patch
+        wget -O /var/www/mediawiki/extensions/NewArticleTemplate/NewArticleTemplate_always-use-subpage-template.patch https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/NewArticleTemplate_always-use-subpage-template.patch
         patch -d /var/www/mediawiki/extensions/NewArticleTemplate < /var/www/mediawiki/extensions/NewArticleTemplate/NewArticleTemplate_always-use-subpage-template.patch
 
     If you are curious about the contents of the patch file, you can view it
@@ -262,7 +262,7 @@ Install MediaWiki Extensions
     Realnames extension includes a bug that causes subpages in the User
     namespace to lack titles. Download a patch file and apply it::
 
-        wget -O /var/www/mediawiki/extensions/Realnames/Realnames_ignore-subpage-titles.patch https://dynamicshjc.case.edu/~vbox/biol300/_downloads/Realnames_ignore-subpage-titles.patch
+        wget -O /var/www/mediawiki/extensions/Realnames/Realnames_ignore-subpage-titles.patch https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/Realnames_ignore-subpage-titles.patch
         patch -d /var/www/mediawiki/extensions/Realnames < /var/www/mediawiki/extensions/Realnames/Realnames_ignore-subpage-titles.patch
 
     If you are curious about the contents of the patch file, you can view it
@@ -288,7 +288,7 @@ Install MediaWiki Extensions
     using the ``action=userrights`` API module. Download a patch file and apply
     it::
 
-        wget -O /var/www/mediawiki/includes/user/Lockdown_api-compatibility.patch https://dynamicshjc.case.edu/~vbox/biol300/_downloads/Lockdown_api-compatibility.patch
+        wget -O /var/www/mediawiki/includes/user/Lockdown_api-compatibility.patch https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/Lockdown_api-compatibility.patch
         patch -d /var/www/mediawiki/includes/user < /var/www/mediawiki/includes/user/Lockdown_api-compatibility.patch
 
     If you are curious about the contents of the patch file, you can view it
@@ -310,7 +310,7 @@ Install MediaWiki Extensions
 
 13. Download and install the extension configuration settings::
 
-        wget -P ~ https://dynamicshjc.case.edu/~vbox/biol300/_downloads/LocalSettings_extensions.php
+        wget -P ~ https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/LocalSettings_extensions.php
         cat ~/LocalSettings_extensions.php >> /var/www/mediawiki/LocalSettings.php
         rm ~/LocalSettings_extensions.php
 
@@ -352,7 +352,7 @@ Install MediaWiki Extensions
 16. Create a script for toggling the locked state of the wiki by downloading and
     installing a file::
 
-        sudo wget -O /usr/local/sbin/lock-wiki https://dynamicshjc.case.edu/~vbox/biol300/_downloads/lock-wiki
+        sudo wget -O /usr/local/sbin/lock-wiki https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/lock-wiki
         sudo chmod +x /usr/local/sbin/lock-wiki
 
     If you are curious about the contents of the script, you can view it here:

source/build-from-scratch/install-mediawiki.rst

@@ -64,7 +64,7 @@ Install MediaWiki
 
 5.  Download and install a custom Apache configuration file for MediaWiki::
 
-        sudo wget -O /etc/apache2/conf-available/mediawiki.conf https://dynamicshjc.case.edu/~vbox/biol300/_downloads/mediawiki.conf
+        sudo wget -O /etc/apache2/conf-available/mediawiki.conf https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/mediawiki.conf
         sudo a2enconf mediawiki
         sudo apache2ctl restart
 
@@ -87,7 +87,7 @@ Install MediaWiki
 
 7.  Download and install the MediaWiki configuration file::
 
-        wget -O /var/www/mediawiki/LocalSettings.php https://dynamicshjc.case.edu/~vbox/biol300/_downloads/LocalSettings.php
+        wget -O /var/www/mediawiki/LocalSettings.php https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/LocalSettings.php
 
     Set the passwords and randomize the secret keys inside the configuration
     file::
@@ -120,7 +120,7 @@ Install MediaWiki
 8.  Create a script for toggling a security variable by downloading and
     installing a file::
 
-        sudo wget -O /usr/local/sbin/disable-upload-script-checks https://dynamicshjc.case.edu/~vbox/biol300/_downloads/disable-upload-script-checks
+        sudo wget -O /usr/local/sbin/disable-upload-script-checks https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/disable-upload-script-checks
         sudo chmod +x /usr/local/sbin/disable-upload-script-checks
 
     If you are curious about the contents of the script, you can view it here:
@@ -143,7 +143,7 @@ Install MediaWiki
     Since the CASAuth extension, which will be installed later, automatically
     fetches real names, this script should not need to be run regularly. ::
 
-        sudo wget -O /usr/local/sbin/set-real-names-in-mediawiki https://dynamicshjc.case.edu/~vbox/biol300/_downloads/set-real-names-in-mediawiki
+        sudo wget -O /usr/local/sbin/set-real-names-in-mediawiki https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/set-real-names-in-mediawiki
 
     Set the MySQL password inside the script::
 

source/create-students-and-teams.rst

@@ -46,7 +46,7 @@ The script needs to be installed only once. Skip to
 4.  Download and install the script for creating student accounts and assigning
     students to teams::
 
-        sudo wget -O /usr/local/sbin/register-students-and-teams https://dynamicshjc.case.edu/~vbox/biol300/_downloads/register-students-and-teams
+        sudo wget -O /usr/local/sbin/register-students-and-teams https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/register-students-and-teams
 
     Set the MySQL password inside the script::
 

source/vim-intro.rst

@@ -77,7 +77,7 @@ directory now::
 
 Finally, download and install the ``.vimrc`` configuration file::
 
-    wget -O ~/.vimrc https://dynamicshjc.case.edu/~vbox/biol300/_downloads/.vimrc
+    wget -O ~/.vimrc https://biol-300-wiki-docs.readthedocs.io/en/latest/_downloads/.vimrc
 
 If you are curious about the contents of ``.vimrc``, you can view it here: