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@Cai-Lab-at-University-of-Michigan

Cai Lab at University of Michigan

The Cai Laboratory develops and uses interdisciplinary techniques to study the development and fine tuning of neural circuits in the mouse brain.

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  1. nTracer nTracer Public

    Rolling release code for the nTracer ImageJ/Fiji plugin, as published in: Roossien DH, et. al, Bioinformatics 2019.

    Java 5

  2. MiCV MiCV Public

    MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.

    CSS 6

  3. nGauge nGauge Public

    A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.

    Jupyter Notebook 5 1

  4. TraceMontage TraceMontage Public

    A ImageJ/Fiji plugin for the merging of multiple neuron traces between two images, as published in: Dizaji SA, Walker L, and Cai D, Journal of Neuroscience Methods 2019.

    Java 2

  5. public_tracing_datasets public_tracing_datasets Public

    Publicly-released neuron tracing datasets from Cai Lab papers.

    3

Repositories

Showing 10 of 17 repositories
  • nTracer2 Public
    Cai-Lab-at-University-of-Michigan/nTracer2’s past year of commit activity
    Python 0 0 0 0 Updated Jul 25, 2024
  • pySISF Public

    A Python library for manipulating SISF images.

    Cai-Lab-at-University-of-Michigan/pySISF’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 25, 2024
  • SISF_CDN Public

    A tool for remote access of SISF Files

    Cai-Lab-at-University-of-Michigan/SISF_CDN’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Jul 24, 2024
  • ffmpeg_HDF5_filter Public

    A HDF5 filter for compression images using ffmpeg video libraries

    Cai-Lab-at-University-of-Michigan/ffmpeg_HDF5_filter’s past year of commit activity
    C 0 0 5 (1 issue needs help) 1 Updated Jul 17, 2024
  • SimpleDAC Public

    An open source hardware interface for experimental automation

    Cai-Lab-at-University-of-Michigan/SimpleDAC’s past year of commit activity
    C 0 GPL-3.0 0 0 0 Updated Jul 7, 2024
  • lossy_image_storage_2024 Public

    Figure source code for Duan, et al. 2024

    Cai-Lab-at-University-of-Michigan/lossy_image_storage_2024’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 18, 2024
  • plscm_v1 Public

    Documentation for the parallel-line scanning confocal microscope design

    Cai-Lab-at-University-of-Michigan/plscm_v1’s past year of commit activity
    0 0 0 0 Updated Jan 31, 2024
  • imagej-hdf5-viewer Public
    Cai-Lab-at-University-of-Michigan/imagej-hdf5-viewer’s past year of commit activity
    Java 0 0 5 (1 issue needs help) 0 Updated Jan 18, 2024
  • MiCV Public

    MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.

    Cai-Lab-at-University-of-Michigan/MiCV’s past year of commit activity
    CSS 6 Apache-2.0 0 0 2 Updated Jan 23, 2023
  • compression_paper_walker2023 Public

    Analysis scripts for "A Comparison of Lossless Compression Methods for Microscopy Data Storage" (Walker 2023)

    Cai-Lab-at-University-of-Michigan/compression_paper_walker2023’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 24, 2022
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