Small fix to the var_calling_freebayes
rule:
- changed
vcffilter -f 'QUAL > 20' {input}
tovcffilter -f 'QUAL > 20'
- added indexed vcf as output of rule
- changed rule command to use named output
Small fix to the var_calling_freebayes
rule:
vcffilter -f 'QUAL > 20' {input}
to vcffilter -f 'QUAL > 20'