Merge branch 'develop' of https://github.com/CenterForOpenScience/osf.io

 into feature/node_settings_apiV2

.coveragerc

@@ -1,11 +1,11 @@
 [run]
-include =
-    api/*
-    framework/*
-    scripts/*
-    website/*
 omit =
     *tests/*
+    */migrations/*
+    */settings/*
+    */templates/*
+    */wsgi.py
+
 [report]
 exclude_lines =
     raise NotImplementedError

.travis.yml

@@ -145,7 +145,11 @@ install:
 
 # Run Python tests (core and addon) and JS tests
 script:
-    - invoke test_travis_$TEST_BUILD -n 4
+    - export COVERAGE=`if [ "$TRAVIS_BRANCH" == "master" ]; then echo "--coverage"; else echo ""; fi`
+    - invoke test_travis_$TEST_BUILD -n 4 $COVERAGE
+
+after_success:
+    - if [[ "$TRAVIS_BRANCH" == "master" ]]; then coveralls; fi
 
 before_cache:
   - rm -Rf $HOME/.cache/pip/http

CHANGELOG

@@ -2,6 +2,30 @@
 Changelog
 *********
 
+0.148.0 (2018-07-18)
+====================
+- Create RegistrationProvider model
+- Create PreprintWithdrawalRequest model
+- Add collections logos to project overview
+- Return None relationships for withdrawn preprints
+- Fix "Other" Subject ordering
+- Replace OSF-internal usage of preprint assets with ProviderAssetFiles
+- Fix preprint download permissions checking
+- Fix collectionSubmission ES mapping
+
+0.147.0 (2018-07-11)
+====================
+- Add choices for ProviderAssetFileNames
+- Add Comments to Reviews email
+- Add ProviderAssetFile API endpoints, AbstractProvider relationship
+- Admin View for creating/managing CollectionProviders
+- Admin view for preprint spam removal
+- Make v2/search accept POST for getting raw data
+- Fix: Add provider to ES collectionSubmission documents
+- Fix: CSS for banners created in OSF Admin
+- Fix: Update preprint citation to use OSF Preprints
+- Fix: Prevent ConcurrentObjectUseError with ProviderAssetFiles
+
 0.146.0 (2018-07-02)
 ====================
 

README.md

@@ -2,6 +2,8 @@
 
 The code for [https://osf.io](https://osf.io).
 
+[![Coverage Status](https://coveralls.io/repos/github/CenterForOpenScience/osf.io/badge.svg)](https://coveralls.io/github/CenterForOpenScience/osf.io)
+
 - `master` Build Status: [![Build Status](https://travis-ci.org/CenterForOpenScience/osf.io.svg?branch=master)](https://travis-ci.org/CenterForOpenScience/osf.io)
 - `develop` Build Status: [![Build Status](https://travis-ci.org/CenterForOpenScience/osf.io.svg?branch=develop)](https://travis-ci.org/CenterForOpenScience/osf.io)
 - Public Repo: https://github.com/CenterForOpenScience/osf.io/

addons/base/views.py

@@ -178,16 +178,16 @@ def check_access(node, auth, action, cas_resp):
 
     # Users attempting to register projects with components might not have
     # `write` permissions for all components. This will result in a 403 for
-    # all `copyto` actions as well as `copyfrom` actions if the component
+    # all `upload` actions as well as `copyfrom` actions if the component
     # in question is not public. To get around this, we have to recursively
     # check the node's parent node to determine if they have `write`
     # permissions up the stack.
     # TODO(hrybacki): is there a way to tell if this is for a registration?
-    # All nodes being registered that receive the `copyto` action will have
+    # All nodes being registered that receive the `upload` action will have
     # `node.is_registration` == True. However, we have no way of telling if
     # `copyfrom` actions are originating from a node being registered.
     # TODO This is raise UNAUTHORIZED for registrations that have not been archived yet
-    if action == 'copyfrom' or (action == 'copyto' and node.is_registration):
+    if action == 'copyfrom' or (action == 'upload' and node.is_registration):
         parent = node.parent_node
         while parent:
             if parent.can_edit(auth):

admin/asset_files/forms.py

@@ -7,6 +7,15 @@
 class ProviderAssetFileForm(forms.ModelForm):
     class Meta:
         model = ProviderAssetFile
-        fields = ['name', 'file', 'providers']
+        fields = ['name', 'file', 'providers', 'id']
 
+    id = forms.IntegerField(required=False, widget=forms.HiddenInput())
     providers = forms.ModelMultipleChoiceField(AbstractProvider.objects.all(), widget=forms.CheckboxSelectMultiple(), required=False)
+
+    def clean(self):
+        cleaned_data = super(ProviderAssetFileForm, self).clean()
+        obj_id = int(cleaned_data.get('id', None) or 0)
+        for provider in cleaned_data.get('providers', []):
+            if provider.asset_files.exclude(id=obj_id).filter(name=cleaned_data.get('name', '')).exists():
+                raise forms.ValidationError('Naming conflict detected on Provider "{}"'.format(provider.name))
+        return cleaned_data

admin/asset_files/views.py

@@ -10,9 +10,9 @@
 
 class ProviderAssetFileList(PermissionRequiredMixin, ListView):
     paginate_by = 25
-    template_name = 'asset_files/list.html'
+    template_name = 'osf/providerassetfile_list.html'
     ordering = 'name'
-    permission_required = 'osf.view_asset_files'
+    permission_required = 'osf.view_providerassetfile'
     raise_exception = True
     model = ProviderAssetFile
 
@@ -47,8 +47,8 @@ def get_object(self, queryset=None):
         return ProviderAssetFile.objects.get(id=self.kwargs.get('asset_id'))
 
 class ProviderAssetFileDisplay(AssetFileMixin, PermissionRequiredMixin, DetailView):
-    permission_required = 'osf.view_asset_files'
-    template_name = 'asset_files/detail.html'
+    permission_required = 'osf.view_providerassetfile'
+    template_name = 'osf/providerassetfile_form.html'
     form_class = ProviderAssetFileForm
     raise_exception = True
     model = ProviderAssetFile
@@ -61,7 +61,7 @@ def get_context_data(self, **kwargs):
         return kwargs
 
 class ProviderAssetFileChangeForm(AssetFileMixin, PermissionRequiredMixin, UpdateView):
-    permission_required = 'osf.change_asset_files'
+    permission_required = 'osf.change_providerassetfile'
     raise_exception = True
     model = ProviderAssetFile
     form_class = ProviderAssetFileForm
@@ -70,14 +70,14 @@ def get_success_url(self, *args, **kwargs):
         return reverse_lazy('asset_files:detail', kwargs={'asset_id': self.kwargs.get('asset_id')})
 
 class ProviderAssetFileDelete(AssetFileMixin, PermissionRequiredMixin, DeleteView):
-    permission_required = 'osf.delete_asset_files'
+    permission_required = 'osf.delete_providerassetfile'
     raise_exception = True
-    template_name = 'asset_files/confirm_delete.html'
+    template_name = 'osf/providerassetfile_confirm_delete.html'
     success_url = reverse_lazy('asset_files:list')
 
 
 class ProviderAssetFileDetail(PermissionRequiredMixin, View):
-    permission_required = 'osf.view_asset_files'
+    permission_required = 'osf.view_providerassetfile'
     raise_exception = True
     form_class = ProviderAssetFileForm
 
@@ -90,9 +90,9 @@ def post(self, request, *args, **kwargs):
         return view(request, *args, **kwargs)
 
 class ProviderAssetFileCreate(PermissionRequiredMixin, CreateView):
-    permission_required = 'osf.change_asset_files'
+    permission_required = 'osf.change_providerassetfile'
     raise_exception = True
-    template_name = 'asset_files/create.html'
+    template_name = 'osf/providerassetfile_create.html'
     success_url = reverse_lazy('asset_files:list')
     model = ProviderAssetFile
     form_class = ProviderAssetFileForm

admin/base/urls.py

@@ -19,6 +19,7 @@
             url(r'^spam/', include('admin.spam.urls', namespace='spam')),
             url(r'^institutions/', include('admin.institutions.urls', namespace='institutions')),
             url(r'^preprint_providers/', include('admin.preprint_providers.urls', namespace='preprint_providers')),
+            url(r'^collection_providers/', include('admin.collection_providers.urls', namespace='collection_providers')),
             url(r'^account/', include('admin.common_auth.urls', namespace='auth')),
             url(r'^password/', include('password_reset.urls')),
             url(r'^nodes/', include('admin.nodes.urls', namespace='nodes')),

admin/collection_providers/forms.py

@@ -0,0 +1,89 @@
+import bleach
+import json
+
+from django import forms
+
+from osf.models import CollectionProvider, CollectedGuidMetadata
+from admin.base.utils import get_nodelicense_choices
+
+
+class CollectionProviderForm(forms.ModelForm):
+    licenses_acceptable = forms.MultipleChoiceField(widget=forms.CheckboxSelectMultiple, required=False, choices=get_nodelicense_choices())
+    collected_type_choices = forms.CharField(widget=forms.HiddenInput, required=False)
+    status_choices = forms.CharField(widget=forms.HiddenInput, required=False)
+
+    class Meta:
+        model = CollectionProvider
+        exclude = ['primary_identifier_name', 'primary_collection', 'type', 'allow_commenting', 'advisory_board',
+                   'example', 'domain', 'domain_redirect_enabled', 'reviews_comments_anonymous',
+                   'reviews_comments_private', 'reviews_workflow']
+
+    def clean_description(self, *args, **kwargs):
+        if not self.data.get('description'):
+            return u''
+        return bleach.clean(
+            self.data.get('description'),
+            tags=['a', 'br', 'em', 'p', 'span', 'strong'],
+            attributes=['class', 'style', 'href', 'title', 'target'],
+            styles=['text-align', 'vertical-align'],
+            strip=True
+        )
+
+    def clean_footer_links(self, *args, **kwargs):
+        if not self.data.get('footer_links'):
+            return u''
+        return bleach.clean(
+            self.data.get('footer_links'),
+            tags=['a', 'br', 'div', 'em', 'p', 'span', 'strong'],
+            attributes=['class', 'style', 'href', 'title', 'target'],
+            styles=['text-align', 'vertical-align'],
+            strip=True
+        )
+
+    def clean_collected_type_choices(self):
+        collection_provider = self.instance
+        # if this is to modify an existing CollectionProvider
+        if collection_provider.primary_collection:
+            type_choices_old = set(collection_provider.primary_collection.collected_type_choices)
+            type_choices_new = set(json.loads(self.data.get('collected_type_choices')))
+            type_choices_added = type_choices_new - type_choices_old
+            type_choices_removed = type_choices_old - type_choices_new
+            for item in type_choices_removed:
+                if CollectedGuidMetadata.objects.filter(collection=collection_provider.primary_collection,
+                                                        collected_type=item).exists():
+                    raise forms.ValidationError(
+                        'Cannot delete "{}" because it is used as metadata on objects.'.format(item)
+                    )
+        else:
+            # if this is creating a CollectionProvider
+            type_choices_added = json.loads(self.data.get('collected_type_choices'))
+            type_choices_removed = []
+
+        return {
+            'added': type_choices_added,
+            'removed': type_choices_removed,
+        }
+
+    def clean_status_choices(self):
+        collection_provider = self.instance
+        # if this is to modify an existing CollectionProvider
+        if collection_provider.primary_collection:
+            status_choices_old = set(collection_provider.primary_collection.status_choices)
+            status_choices_new = set(json.loads(self.data.get('status_choices')))
+            status_choices_added = status_choices_new - status_choices_old
+            status_choices_removed = status_choices_old - status_choices_new
+            for item in status_choices_removed:
+                if CollectedGuidMetadata.objects.filter(collection=collection_provider.primary_collection,
+                                                        status=item).exists():
+                    raise forms.ValidationError(
+                        'Cannot delete "{}" because it is used as metadata on objects.'.format(item)
+                    )
+        else:
+            # if this is creating a CollectionProvider
+            status_choices_added = json.loads(self.data.get('status_choices'))
+            status_choices_removed = []
+
+        return {
+            'added': status_choices_added,
+            'removed': status_choices_removed,
+        }

admin/collection_providers/urls.py

@@ -0,0 +1,14 @@
+from django.conf.urls import url
+from . import views
+
+app_name = 'admin'
+
+urlpatterns = [
+    url(r'^create/$', views.CreateCollectionProvider.as_view(), name='create'),
+    url(r'^$', views.CollectionProviderList.as_view(), name='list'),
+    url(r'^import/$', views.ImportCollectionProvider.as_view(), name='import'),
+    url(r'^(?P<collection_provider_id>[a-z0-9]+)/$', views.CollectionProviderDetail.as_view(), name='detail'),
+    url(r'^(?P<collection_provider_id>[a-z0-9]+)/delete/$', views.DeleteCollectionProvider.as_view(), name='delete'),
+    url(r'^(?P<collection_provider_id>[a-z0-9]+)/export/$', views.ExportColectionProvider.as_view(), name='export'),
+    url(r'^(?P<collection_provider_id>[a-z0-9]+)/import/$', views.ImportCollectionProvider.as_view(), name='import'),
+]