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fix(lib/trie): Check for root in EncodeAndHash #2359

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merged 6 commits into from
Mar 14, 2022

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kishansagathiya
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@kishansagathiya kishansagathiya commented Mar 9, 2022

Changes

  • In EncodeAndHash, If a node is root, we return blake2b hash of its encoding as hash
    regardless of whether length of encoding is smaller or greater than 32

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If a node is root, we return blake2b hash of its encoding as hash
regardless of whether length of encoding is smaller or greater than 32
@kishansagathiya kishansagathiya marked this pull request as ready for review March 9, 2022 11:40
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Nice, just a few nits.

Also, would it be possible to instead change the database store/fetch code to be able to understand smaller than 32 bytes values instead of hash for the root node? I guess not, just asking this out of curiosity.

internal/trie/node/hash_test.go Outdated Show resolved Hide resolved
internal/trie/node/hash_test.go Outdated Show resolved Hide resolved
@@ -18,24 +18,24 @@ type recorder interface {

// findAndRecord search for a desired key recording all the nodes in the path including the desired node
func findAndRecord(t *Trie, key []byte, recorder recorder) error {
return find(t.root, key, recorder)
return find(t.root, key, recorder, true)
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nit for extreme readability

Suggested change
return find(t.root, key, recorder, true)
const isRoot = true
return find(t.root, key, recorder, isRoot)

lib/trie/lookup.go Outdated Show resolved Hide resolved
@@ -49,5 +49,5 @@ func find(parent Node, key []byte, recorder recorder) error {
return nil
}

return find(b.Children[key[length]], key[length+1:], recorder)
return find(b.Children[key[length]], key[length+1:], recorder, false)
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Suggested change
return find(b.Children[key[length]], key[length+1:], recorder, false)
const isChildRoot = false
return find(b.Children[key[length]], key[length+1:], recorder, isChildRoot)

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the isChildRoot variable does not make much sense, the root node already has been processed and the other nodes are not the root, so it is explicit that for other find calls the false argument means the nodes are not the root

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Yeah rename as you wish. I just like setting constants inline to avoid looking up the argument names in the function. Lazy me I guess 😄

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codecov bot commented Mar 9, 2022

Codecov Report

Merging #2359 (32f4e17) into development (8c07aec) will increase coverage by 0.03%.
The diff coverage is 89.18%.

❗ Current head 32f4e17 differs from pull request most recent head 7446b9c. Consider uploading reports for the commit 7446b9c to get more accurate results

Impacted file tree graph

@@               Coverage Diff               @@
##           development    #2359      +/-   ##
===============================================
+ Coverage        58.01%   58.04%   +0.03%     
===============================================
  Files              213      213              
  Lines            28014    28008       -6     
===============================================
+ Hits             16251    16257       +6     
+ Misses           10120    10111       -9     
+ Partials          1643     1640       -3     
Flag Coverage Δ
unit-tests 58.04% <89.18%> (+0.03%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
dot/state/test_helpers.go 49.76% <ø> (-0.24%) ⬇️
lib/trie/database.go 48.39% <75.00%> (+0.85%) ⬆️
dot/state/block_finalisation.go 47.25% <83.33%> (+2.60%) ⬆️
dot/state/tries.go 100.00% <100.00%> (+7.31%) ⬆️
internal/trie/node/hash.go 84.21% <100.00%> (ø)
lib/trie/lookup.go 76.00% <100.00%> (ø)
dot/network/connmgr.go 89.04% <0.00%> (-1.37%) ⬇️
lib/runtime/wasmer/imports.go 48.46% <0.00%> (-0.26%) ⬇️
dot/network/notifications.go 69.59% <0.00%> (+1.35%) ⬆️
... and 1 more

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@kishansagathiya
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Also, would it be possible to instead change the database store/fetch code to be able to understand smaller than 32 bytes values instead of hash for the root node?

This could be possible. I prefer the current approach however. I prefer function's behaviour to be obvious based on its signature. If I edit key inside say db.Put(key, value), that is not an obvious behaviour. A behaviour like that could lead to bugs!

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qdm12 commented Mar 10, 2022

If I edit key inside say db.Put(key, value), that is not an obvious behaviour. A behaviour like that could lead to bugs!

Definitely. But can't we write keys as byte slices (not fixed size arrays) to database? That way there might not be any custom code for the root, and we can know if it's a node value or the node encoding hash digest depending on the database retrieved byte slice length? 🤔 Maybe I'm wrong though..

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kishansagathiya commented Mar 10, 2022

But can't we write keys as byte slices (not fixed size arrays) to database?

That is what we do. the signature is db.Put(key []byte, value []byte)

That way there might not be any custom code for the root, and we can know if it's a node value or the node encoding hash digest depending on the database retrieved byte slice length?

We can't differentiate that way. hash of root node would always be 32 bytes. but hash of other nodes could be 32 or less than that. Also, we would need root hash at other place than just db related tasks.

Also, the approach works :)

lib/trie/database.go Outdated Show resolved Hide resolved
@kishansagathiya kishansagathiya merged commit 087db89 into development Mar 14, 2022
@kishansagathiya kishansagathiya deleted the kishan/fix/encode-and-hash branch March 14, 2022 08:44
github-actions bot pushed a commit that referenced this pull request Nov 23, 2022
# [0.7.0](v0.6.0...v0.7.0) (2022-11-23)

### Bug Fixes

* **chain:** update ed25519 addresses in dev/gssmr genesis files ([#2225](#2225)) ([5f47d8b](5f47d8b))
* **ci:** caching of Go caches ([#2451](#2451)) ([ce3c10c](ce3c10c))
* **ci:** codecov.yml configuration ([#2698](#2698)) ([d4fc383](d4fc383))
* **ci:** comment skip code for required workflows ([#2312](#2312)) ([45dce9b](45dce9b))
* **ci:** copyright workflow to exit if different files ([#2487](#2487)) ([89c32ae](89c32ae))
* **ci:** deepsource toml configuration ([#2744](#2744)) ([86a70de](86a70de))
* **ci:** embed v0.9.20 runtime, update test suite, and ci workflows ([#2543](#2543)) ([0fff418](0fff418)), closes [#2419](#2419) [#2561](#2561) [#2572](#2572) [#2581](#2581) [#2671](#2671)
* **ci:** fix staging Dockerfile ([#2474](#2474)) ([ae04b80](ae04b80))
* **ci:** mocks checking fixes ([#2274](#2274)) ([d1308e0](d1308e0))
* **ci:** run devnet module unit tests ([#2756](#2756)) ([f635c59](f635c59))
* **ci:** run golangci-lint on integration tests ([#2275](#2275)) ([3ae3401](3ae3401))
* **cmd:** allow --genesis flag to be passed to base command ([#2427](#2427)) ([7f5b5aa](7f5b5aa))
* **cmd:** avoid nil pointer dereference ([#2578](#2578)) ([f2cdfea](f2cdfea))
* **config:** temporary fix for pprof enabled setting precedence ([#2786](#2786)) ([d4d6262](d4d6262))
* **core:** fix txn pool for latest runtime ([#2809](#2809)) ([1551e66](1551e66))
* **deps:** upgrade chaindb to remove badger logs ([#2738](#2738)) ([e0c5706](e0c5706))
* **devnet:** Fix build workflow for devnet ([#2125](#2125)) ([0375fc2](0375fc2))
* **Dockerfile:** remove script entrypoint ([#2707](#2707)) ([abd161b](abd161b))
* **dot/core:** `RuntimeInstance` interface `Version` signature ([#2783](#2783)) ([7d66ec0](7d66ec0))
* **dot/core:** fix the race condition in TrieState ([#2499](#2499)) ([804069c](804069c)), closes [#2402](#2402)
* **dot/digest:** BABE NextEpochData and NextConfigData should be set on finalization ([#2339](#2339)) ([e991cc8](e991cc8))
* **dot/digest:** verify if next epoch already contains some definition ([#2472](#2472)) ([a2ac6c2](a2ac6c2))
* **dot/netwok:** check for duplicate message earlier ([#2435](#2435)) ([d62503f](d62503f))
* **dot/network:** change BlockRequestMessage number from uint64 to uint32 ([8105cd4](8105cd4))
* **dot/network:** close notifications streams ([#2093](#2093)) ([de6e7c9](de6e7c9)), closes [#2046](#2046)
* **dot/network:** fixing errMissingHandshakeMutex ([#2303](#2303)) ([eb07a53](eb07a53))
* **dot/network:** memory improvement for network buffers ([#2233](#2233)) ([fd9b70d](fd9b70d))
* **dot/network:** public IP address logging ([#2140](#2140)) ([9e21587](9e21587))
* **dot/network:** re-add nil mutex check for disconnected peer ([#2408](#2408)) ([9b39bd1](9b39bd1))
* **dot/network:** remove `defer cancel()` inside loop ([#2248](#2248)) ([9e360a5](9e360a5))
* **dot/network:** resize bytes slice buffer if needed ([#2291](#2291)) ([8db8b2a](8db8b2a))
* **dot/peerset:** fix sending on closed channel race condition when dropping peer ([#2573](#2573)) ([2fa5d8a](2fa5d8a))
* **dot/peerset:** remove race conditions from `peerset` package ([#2267](#2267)) ([df09d45](df09d45))
* **dot/rpc/modules:** grandpa.proveFinality update parameters, fix bug ([#2576](#2576)) ([e7749cf](e7749cf))
* **dot/rpc/modules:** rpc.state.queryStorage fixed ([#2565](#2565)) ([1ec0d47](1ec0d47))
* **dot/rpc:** include unsafe flags to be considered by RPC layer ([#2483](#2483)) ([3822257](3822257))
* **dot/state/epoch, lib/babe:** enable block production through epochs without rely on finalization ([#2593](#2593)) ([a0a1804](a0a1804))
* **dot/state:** actually prune finalized tries from memory ([#2196](#2196)) ([e4bc375](e4bc375))
* **dot/state:** change map of tries implementation to have working garbage collection ([#2206](#2206)) ([fada46b](fada46b))
* **dot/state:** inject mutex protected tries to states ([#2287](#2287)) ([67a9bbb](67a9bbb))
* **dot/subscription:** check websocket message from untrusted data ([#2527](#2527)) ([1f20d98](1f20d98))
* **dot/subscription:** unsafe type casting from untrusted input ([#2529](#2529)) ([1015733](1015733))
* **dot/sync, dot/rpc:** implement HighestBlock ([#2195](#2195)) ([f8d8657](f8d8657))
* **dot/sync:** cleanup logs; don't log case where we fail to get parent while processing ([#2188](#2188)) ([cb360ab](cb360ab))
* **dot/sync:** fix "block with unknown header is ready" error ([#2191](#2191)) ([483466f](483466f))
* **dot/sync:** fix `Test_lockQueue_threadSafety` ([#2605](#2605)) ([223cfbb](223cfbb))
* **dot/sync:** Fix flaky tests `Test_chainSync_logSyncSpeed` and `Test_chainSync_start` ([#2610](#2610)) ([7e1014b](7e1014b))
* **dot/sync:** Gossip `BlockAnnounceMessage` only after  successfully imported ([#2885](#2885)) ([69031a6](69031a6))
* **dot/sync:** remove block announcement in `bootstrap` sync mode ([#2906](#2906)) ([2b4c257](2b4c257))
* **dot/sync:** remove max size limit from ascending block requests ([#2256](#2256)) ([e287d7e](e287d7e))
* **dot/sync:** sync benchmark ([#2234](#2234)) ([2f3aef8](2f3aef8))
* **dot/telemetry:** telemetry hashes to be in the hexadecimal format ([#2194](#2194)) ([9b48106](9b48106))
* **dot:** database close error checks ([#2948](#2948)) ([bdb0eea](bdb0eea))
* **dot:** no error logged for init check ([#2502](#2502)) ([2971325](2971325))
* ensure we convert the `uint` type ([#2626](#2626)) ([792e53f](792e53f))
* fix logger mutex locking in `.New` method ([#2114](#2114)) ([e7207ed](e7207ed))
* **internal/log:** log level `DoNotChange` ([#2672](#2672)) ([0008b59](0008b59))
* **levels-logged:** Fix log levels logging at start ([#2236](#2236)) ([a90a6e0](a90a6e0))
* **lib/babe:** check if authority index is in the `authorities` range ([#2601](#2601)) ([1072888](1072888))
* **lib/babe:** ensure the slot time is correct before build a block ([#2648](#2648)) ([78c03b6](78c03b6))
* **lib/babe:** epoch context error wrapping ([#2484](#2484)) ([c053dea](c053dea))
* **lib/babe:** Unrestricted Loop When Building Blocks (GSR-19) ([#2632](#2632)) ([139ad89](139ad89))
* **lib/blocktree:** reimplement `BestBlockHash` to take into account primary blocks in fork choice rule ([#2254](#2254)) ([1a368e2](1a368e2))
* **lib/grandpa:** avoid spamming round messages ([#2688](#2688)) ([b0042b8](b0042b8))
* **lib/grandpa:** capped number of tracked commit messages ([#2490](#2490)) ([47c23e6](47c23e6))
* **lib/grandpa:** capped number of tracked vote messages ([#2485](#2485)) ([d2ee47e](d2ee47e)), closes [#1531](#1531)
* **lib/grandpa:** check equivocatory votes count ([#2497](#2497)) ([014629d](014629d)), closes [#2401](#2401)
* **lib/grandpa:** Duplicate votes is GRANDPA are counted as equivocatory votes (GSR-11) ([#2624](#2624)) ([422e7b3](422e7b3))
* **lib/grandpa:** Storing Justification Allows Extra Bytes (GSR-13) ([#2618](#2618)) ([0fcde63](0fcde63))
* **lib/grandpa:** update grandpa protocol ID ([#2678](#2678)) ([3be75b2](3be75b2))
* **lib/grandpa:** various finality fixes, improves cross-client finality ([#2368](#2368)) ([c04d185](c04d185))
* **lib/grandpa:** verify equivocatory votes in grandpa justifications ([#2486](#2486)) ([368f8b6](368f8b6))
* **lib/runtime:** avoid caching version in runtime instance ([#2425](#2425)) ([7ab31f0](7ab31f0))
* **lib/runtime:** stub v0.9.17 host API functions ([#2420](#2420)) ([6a7b223](6a7b223))
* **lib/trie:** `handleDeletion` generation propagation ([24c303d](24c303d))
* **lib/trie:** `PopulateMerkleValues` functionality changes and fixes ([#2871](#2871)) ([7131290](7131290))
* **lib/trie:** Check for root in EncodeAndHash ([#2359](#2359)) ([087db89](087db89))
* **lib/trie:** Make sure writing and reading a trie to disk gives the same trie  and cover more store/load child trie related test cases ([#2302](#2302)) ([7cd4118](7cd4118))
* **lib/trie:** prepare trie nodes for mutation only when needed ([#2834](#2834)) ([26868df](26868df))
* **lib/trie:** remove map deletion at `loadProof` ([#2259](#2259)) ([fbd13d2](fbd13d2))
* **lint:** fix issues found by golangcilint 1.47.3 ([#2715](#2715)) ([5765e67](5765e67))
* **mocks:** add missing `//go:generate` for mocks ([#2273](#2273)) ([f4f7465](f4f7465))
* **pprof:** pprofserver flag changed to boolean ([#2205](#2205)) ([be00a69](be00a69))
* **staging:** revise datadog-agent start process ([#2935](#2935)) ([36ce37d](36ce37d))
* **state/epoch:** assign epoch 1 when block number is 0 ([#2592](#2592)) ([e5c8cf5](e5c8cf5))
* **state/grandpa:** track changes across forks ([#2519](#2519)) ([3ab76bc](3ab76bc))
* **tests:** `TestAuthorModule_HasSessionKeys_Integration` ([#2932](#2932)) ([8d809aa](8d809aa))
* **tests:** fix block body regex in `TestChainRPC` ([#2805](#2805)) ([b0680f8](b0680f8))
* **tests:** Fix RFC3339 regex for log unit tests ([9caea2a](9caea2a))
* **tests:** Fix wasmer flaky sorts ([#2643](#2643)) ([7eede9a](7eede9a))
* **tests:** handle node crash during waiting ([#2691](#2691)) ([843bd50](843bd50))
* **tests:** update block body regex in `TestChainRPC` ([#2674](#2674)) ([055e5c3](055e5c3))
* **trie:** decode inline child nodes ([#2369](#2369)) ([9efde47](9efde47))
* **trie:** descendants count for clear prefix ([#2606](#2606)) ([1826896](1826896))
* **trie:** disallow empty byte slice node values ([#2927](#2927)) ([d769d1c](d769d1c))
* **trie:** equality differentiate nil and empty storage values ([#2969](#2969)) ([72a08ec](72a08ec))
* **trie:** no in-memory caching of node encoding ([#2919](#2919)) ([856780b](856780b))
* **trie:** Panic when deleting nonexistent keys from trie (GSR-10) ([#2609](#2609)) ([7886318](7886318))
* **trie:** remove encoding buffers pool ([#2929](#2929)) ([f4074cc](f4074cc))
* **trie:** use cached Merkle values for root hash ([#2943](#2943)) ([ec2549a](ec2549a))
* **trie:** use direct Merkle value for database keys ([#2725](#2725)) ([1a3c3ae](1a3c3ae))
* upgrade auto-generated mocks ([#2910](#2910)) ([a2975a5](a2975a5))
* **wasmer:** error logs for signature verification ([#2752](#2752)) ([363c080](363c080))
* **wasmer:** fix flaky sort in `Test_ext_crypto_sr25519_public_keys_version_1` ([#2607](#2607)) ([c061b35](c061b35))

### Features

* **build:** add `github.com/breml/rootcerts` ([#2695](#2695)) ([c74a5b0](c74a5b0))
* **build:** binary built-in timezone data ([#2697](#2697)) ([fdd5bda](fdd5bda))
* **chain:** use always the raw genesis file ([#2775](#2775)) ([dd2fbc9](dd2fbc9))
* **ci:** update mockery from `2.10` to `2.14` ([#2642](#2642)) ([d2c42b8](d2c42b8))
* **cross-client:** create docker-compose.yml for local devnet  ([#2282](#2282)) ([8abbd87](8abbd87))
* detect chain directory dynamically ([#2292](#2292)) ([85c466c](85c466c))
* **devnet:** add substrate docker images to dockerfile  ([#2263](#2263)) ([b7b2a66](b7b2a66))
* **devnet:** continuous integration `gssmr` devnet on AWS ECS ([#2096](#2096)) ([d096d44](d096d44))
* **docker:** docker-compose.yml to run Gossamer, Prometheus and Grafana ([#2706](#2706)) ([c5dda51](c5dda51))
* **dot/network:** add mismatched genesis peer reporting ([#2265](#2265)) ([a1d7269](a1d7269))
* **dot/state:** `gossamer_storage_tries_cached_total` gauge metric ([#2272](#2272)) ([625cbcf](625cbcf))
* **e2e:** build Gossamer on any test run ([#2608](#2608)) ([f97e0ef](f97e0ef))
* **go:** upgrade Go from 1.17 to 1.18 ([#2379](#2379)) ([d85a1db](d85a1db))
* include nested varying data type on neighbor messages ([#2722](#2722)) ([426569a](426569a))
* **lib/babe:** implement secondary slot block production ([#2260](#2260)) ([fcb81a3](fcb81a3))
* **lib/runtime:** support Substrate WASM compression ([#2213](#2213)) ([fd60061](fd60061))
* **lib/trie:** atomic tracked merkle values ([#2876](#2876)) ([1c4174c](1c4174c))
* **lib/trie:** clear fields when node is dirty ([#2297](#2297)) ([1162828](1162828))
* **lib/trie:** only copy nodes when mutation is certain ([#2352](#2352)) ([86624cf](86624cf))
* **lib/trie:** opportunistic parallel hashing ([#2081](#2081)) ([790dfb5](790dfb5))
* **metrics:** replace metrics port with address (breaking change) ([#2382](#2382)) ([d2ec68d](d2ec68d))
* **pkg/scale:** add `Encoder` with `Encode` method ([#2741](#2741)) ([af5c63f](af5c63f))
* **pkg/scale:** add use of pkg/error Wrap for error handling ([#2708](#2708)) ([08c4281](08c4281))
* **pkg/scale:** encoding and decoding of maps in scale ([#2894](#2894)) ([405db51](405db51)), closes [#2796](#2796)
* **pkg/scale:** support for custom `VaryingDataType` types ([#2612](#2612)) ([914a747](914a747))
* remove uneeded runtime prefix logs ([#2110](#2110)) ([8bd05d1](8bd05d1))
* remove unused code ([#2677](#2677)) ([b3698d7](b3698d7))
* **scale:** add range checks to decodeUint function ([#2683](#2683)) ([ac700f8](ac700f8))
* **trie:** decode all inlined node variants ([#2611](#2611)) ([b09eb07](b09eb07))
* **trie:** export `LoadFromProof` ([#2455](#2455)) ([0b4f33d](0b4f33d))
* **trie:** faster header decoding ([#2649](#2649)) ([d9460e3](d9460e3))
* **trie:** finer deep copy of nodes ([#2384](#2384)) ([bd6d8e4](bd6d8e4))
* **trie:** tracking of number of descendant nodes for each node ([#2378](#2378)) ([dfcdd3c](dfcdd3c))
* **trie:** use scale encoder ([#2930](#2930)) ([e3dc108](e3dc108))
* **wasmer/crypto:** move sig verifier to crypto pkg ([#2057](#2057)) ([dc8bbef](dc8bbef))
* **wasmer:** Add `SetTestVersion` method to `Config` struct ([#2823](#2823)) ([e5c9336](e5c9336))
* **wasmer:** get and cache state version in instance context ([#2747](#2747)) ([3fd63db](3fd63db))
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