Changing makefile, again, and bumping version

ChaissonLab · Jun 12, 2023 · 1ea1a73 · 1ea1a73
1 parent 9fb3345
commit 1ea1a73
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/src/Makefile b/src/Makefile
@@ -3,7 +3,7 @@ PROG = vamos
 LIBS       = -lhts -lz -lpthread
 #ABPOA_LIBS = -lm -lz -lpthread
 
-ifeq ($(CC),)
+ifeq ($(CC),"cc")
 	CC=gcc
 endif
 
@@ -44,7 +44,7 @@ all: $(PROG)
 
 
 $(ABPOA_DIR)/lib/libabpoa.a:
-	cd $(ABPOA_DIR) && make sse2=TRUE CC=\"$(CC)\"
+	cd $(ABPOA_DIR) && make sse2=TRUE
 
 vamos: main.o io.o vcf.o vntr.o acc_lookup_table.o phase.o msa.o $(ABPOA_DIR)/lib/libabpoa.a
 	$(CXX) $(CFLAGS) -o $@ $^ -L $(CONDA_PREFIX)/lib $(LIBS) -L $(ABPOA_DIR)/lib -labpoa -lrt

diff --git a/src/io.h b/src/io.h
@@ -36,7 +36,7 @@ class IO
 	IO () 
 	{
 		version = (char *) malloc(7);
-		strcpy(version, "1.2.2");
+		strcpy(version, "1.2.3");
 		region_and_motifs = NULL;
 		input_bam = NULL;
 		vntr_bed = NULL;