Merge branch 'new_io'

Conflicts: src/Makefile src/io.cpp src/io.h src/main.cpp src/threads.h src/vntr.cpp src/vntr.h
ChaissonLab · Sep 19, 2023 · b9c9cdf · b9c9cdf
2 parents e36449c + af091c6
commit b9c9cdf
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Showing 13 changed files with 504 additions and 331 deletions.
diff --git a/src/bounded_anno_local.cpp b/src/bounded_anno_local.cpp
@@ -46,7 +46,7 @@ static int scoring(vector<MOTIF> &motifs, vector<int> &matches, int top, double
 
 
 void string_decomposer(vector<uint8_t> &optMotifs, vector<int> &motifQV, vector<int> &starts, vector<int> &ends,
-    vector<vector<int> > &motifNMatches, vector<MOTIF> &motifs, char *vntr, int N, const OPTION &opt,
+    vector<vector<int> > &motifNMatches, vector<MOTIF> &motifs, const char *vntr, int N, const OPTION &opt,
     SDTables &sdTables, vector<int > &mismatchCI)
 {