PaperScripts

Scripts for our papers. Readers can check, replicate or make use of the scripts in their future studies.

Chen_2017_HBM:

Chen, X., Lu, B., Yan, C.G. (2018). Reproducibility of R-fMRI metrics on the impact of different strategies for multiple comparison correction and sample sizes. Hum Brain Mapp, 39(1), 300-318, doi:10.1002/hbm.23843.

Chen_2020_NeuroImage:

Chen, X., Chen, N.X., Shen, Y.Q., Li, H.X., Li, L., Lu, B., Zhu, Z.C., Fan, Z., Yan, C.G. (2020). The subsystem mechanism of default mode network underlying rumination: A reproducible neuroimaging study. Neuroimage, 221, 117185, doi:10.1016/j.neuroimage.2020.117185.

Chen_2021_NeuroImage:

Chen, X., Yan, C.-G. (2021). Hypostability in the default mode network and hyperstability in the frontoparietal control network of dynamic functional architecture during rumination. Neuroimage, 241, 118427, doi:10.1016/j.neuroimage.2021.118427.

Li_2019_NeuroImage:

Li, L., Lu, B., Yan, C.G. (2020). Stability of dynamic functional architecture differs between brain networks and states. Neuroimage, 216, 116230, doi:10.1016/j.neuroimage.2019.116230.

Li_2021_HBM

Li, L., Su, Y.A., Wu, Y.K., Castellanos, F.X., Li, K., Li, J.T., Si, T.M., Yan, C.G. (2021). Eight-week antidepressant treatment reduces functional connectivity in first-episode drug-na•ve patients with major depressive disorder. Hum Brain Mapp, 42(8), 2593-2605, doi:10.1002/hbm.25391.

LiHX_2021_BehaviorResearchMethods

Li, H.X., Lu, B., Chen, X., Li, X.Y., Castellanos, F.X., Yan, C.G. (2021). Exploring self-generated thoughts in a resting state with natural language processing. Behav Res Methods, doi:10.3758/s13428-021-01710-6.

Shen_2020_JPRP:

Shen, Y.-Q., Zhou, H.-X., Chen, X., Castellanos, F.X., Yan, C.-G. (2020). Meditation effect in changing functional integrations across large-scale brain networks: Preliminary evidence from a meta-analysis of seed-based functional connectivity. Journal of Pacific Rim Psychology, 14, e10, doi:10.1017/prp.2020.1.

Yan_2019_PNAS:

Yan, C.G., Chen, X., Li, L., Castellanos, F.X., Bai, T.J., Bo, Q.J., Cao, J., Chen, G.M., Chen, N.X., Chen, W., Cheng, C., Cheng, Y.Q., Cui, X.L., Duan, J., Fang, Y.R., Gong, Q.Y., Guo, W.B., Hou, Z.H., Hu, L., Kuang, L., Li, F., Li, K.M., Li, T., Liu, Y.S., Liu, Z.N., Long, Y.C., Luo, Q.H., Meng, H.Q., Peng, D.H., Qiu, H.T., Qiu, J., Shen, Y.D., Shi, Y.S., Wang, C.Y., Wang, F., Wang, K., Wang, L., Wang, X., Wang, Y., Wu, X.P., Wu, X.R., Xie, C.M., Xie, G.R., Xie, H.Y., Xie, P., Xu, X.F., Yang, H., Yang, J., Yao, J.S., Yao, S.Q., Yin, Y.Y., Yuan, Y.G., Zhang, A.X., Zhang, H., Zhang, K.R., Zhang, L., Zhang, Z.J., Zhou, R.B., Zhou, Y.T., Zhu, J.J., Zou, C.J., Si, T.M., Zuo, X.N., Zhao, J.P., Zang, Y.F. (2019). Reduced default mode network functional connectivity in patients with recurrent major depressive disorder. Proc Natl Acad Sci U S A, 116(18), 9078-9083, doi:10.1073/pnas.1900390116.

WangYW_2023_NeuroImage:

Wang, Y.W., Chen, X., Yan, C.G. (2023). Comprehensive evaluation of harmonization on functional brain imaging for multisite data-fusion. Neuroimage, 120089, doi:10.1016/j.neuroimage.2023.120089.