MinNet

This repository contains all codes for manuscript Single-cell Multi-omics Integration for Unpaired Data by a Siamese Network with Graph-based Contrastive Loss

• To replicate the results in the paper, please refer to the fig* folder
• To train your own MinNet for integration, please refer to the train folder
• To use the pre-trained model on Bone Marrow Mononuclear Cells, download the fig2/BMMC_data/SiaNN/utils/SiaNN.ckpts and refer to the notebook fig2/BMMC_data/SiaNN/SiaNN.ipynb for steps to integrate your data.