The chaste_codegen_sbml module takes SBML models as input and uses libSBML to parse the models and output C++ code for Chaste.
We recommend installing in a virtual environment e.g.
python -m venv /path/to/new/virtual/environment
source /path/to/new/virtual/environment/bin/activate
User installation:
cd /path/to/chaste_codegen_sbml
pip install .
Developer installation. This adds additional dependencies for development and testing (e.g. pytest) and makes the installation editable:
cd /path/to/chaste_codegen_sbml
pip install -e .[dev]
chaste_codegen_sbml [-h] sbml_file