Chaste Workshop 2023

A directory of workshop materials for the September 2023 Chaste workshop in Oxford. You can find the workshop timetable here.

The main chaste repository can be found here

Monday

Introduction to Cell-Based Modelling with PyChaste (13:30 - 16:30)

Learn to model cell-based models using Chaste in Python. This session will use Jupyter notebooks running in the cloud, but you can also set up the materials locally if you wish to.

Tuesday

Getting Up and Running with Chaste in VSCode (10:00 - 11:00)

Learn how to install and configure Chaste on your own machine using docker and VSCode.

Chaste in C++ - Extending Functionality (11:00 - 12:30)

See how Chaste works in C++ and how you can extend existing functionality.

Immersed Boundary Method for Cell Shape Representation (14:00 - 16:30)

Use the immersed boundary method to model the shapes of cells.

Overview of the new Chaste infrastructure, and how to access help and support (16:30-17:00)

Wednesday

Lecture: Including cell-environment and cell-cell feedbacks in Chaste (10:00 - 10:30)

Practical: Including cell-cell feedbacks (10:30 - 12:30)

Explore how to include cell-cell feedbacks in Chaste.

Practical: Including cell-environment feedbacks (14:00 - 16:00)

Explore how to include cell-environment feedbacks in Chaste.

Lightning wrapups (16:00-17:00)