ubuntu-tests #21
Workflow file for this run
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| name: ubuntu-tests | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| setup: | |
| name: test modules on ubuntu | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu:24.04 | |
| xsd_ver: 4.0.0 | |
| xercesc_ver: 3.2.4 | |
| sundials_ver: 6.4.1 | |
| boost_ver: 1.83.0 | |
| vtk_ver: 9.1.0 | |
| petsc_ver: 3.19.2 | |
| hdf5_ver: 1.10.10 | |
| petsc_arch: linux-gnu | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ${{ matrix.os }} | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| - id: set-env | |
| uses: ./.github/actions/set-env | |
| - name: setup defaults | |
| uses: ./.github/actions/setup-defaults | |
| - name: install and cache xsd module | |
| uses: ./.github/actions/setup-xsd | |
| with: | |
| xsd_ver: ${{ matrix.xsd_ver }} | |
| - name: build and cache xercesc module | |
| uses: ./.github/actions/setup-xercesc | |
| with: | |
| xercesc_ver: ${{ matrix.xercesc_ver }} | |
| - name: build and cache sundials module | |
| uses: ./.github/actions/setup-sundials | |
| with: | |
| sundials_ver: ${{ matrix.sundials_ver }} | |
| - name: build and cache boost module | |
| uses: ./.github/actions/setup-boost | |
| with: | |
| boost_ver: ${{ matrix.boost_ver }} | |
| - name: build and cache vtk module | |
| uses: ./.github/actions/setup-vtk | |
| with: | |
| vtk_ver: ${{ matrix.vtk_ver }} | |
| - name: build and cache petsc_hdf5 module | |
| uses: ./.github/actions/setup-petsc_hdf5 | |
| with: | |
| petsc_ver: ${{ matrix.petsc_ver }} | |
| hdf5_ver: ${{ matrix.hdf5_ver }} | |
| petsc_arch: ${{ matrix.petsc_arch }} | |
| - name: checkout chaste | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: Chaste/Chaste | |
| path: Chaste | |
| submodules: recursive | |
| - name: make build and test directories | |
| run: | | |
| mkdir -p Chaste/build | |
| mkdir -p chaste-test-dir | |
| echo "CHASTE_TEST_OUTPUT=$(pwd)/chaste-test-dir" >> ${GITHUB_ENV} | |
| - name: compile chaste build info | |
| run: | | |
| module purge | |
| module use ${{ steps.set-env.outputs.modules_dir }}/modulefiles | |
| module load xsd/${{ matrix.xsd_ver }} | |
| module load xercesc/${{ matrix.xercesc_ver }} | |
| module load sundials/${{ matrix.sundials_ver }} | |
| module load boost/${{ matrix.boost_ver }} | |
| module load vtk/${{ matrix.vtk_ver }} | |
| module load petsc_hdf5/${{ matrix.petsc_ver }}_${{ matrix.hdf5_ver }}/${{ matrix.petsc_arch }} | |
| cmake -DCMAKE_BUILD_TYPE=Release .. | |
| cmake --build . --parallel $(nproc) --target TestChasteBuildInfo | |
| ctest -V -R TestChasteBuildInfo --output-on-failure | tee buildinfo | |
| working-directory: Chaste/build | |
| shell: bash --login -e -o pipefail {0} # login to source /etc/profile.d/modules.sh | |
| - name: verify dependency versions | |
| run: | | |
| sed -i.bak 's/"//g' buildinfo # removes quotes from old sundials versions | |
| maj_min_rev='^[0-9]\+\.[0-9]\+\.[0-9]\+' | |
| maj_min='^[0-9]\+\.[0-9]\+' | |
| xsd_ver="$(echo ${{ matrix.xsd_ver }} | grep -o ${maj_min_rev})" | |
| xercesc_ver="$(echo ${{ matrix.xercesc_ver }} | grep -o ${maj_min_rev})" | |
| sundials_ver="$(echo ${{ matrix.sundials_ver }} | grep -o ${maj_min_rev})" | |
| boost_ver="$(echo ${{ matrix.boost_ver }} | grep -o ${maj_min_rev})" | |
| vtk_ver="$(echo ${{ matrix.vtk_ver }} | grep -o ${maj_min})" | |
| petsc_ver="$(echo ${{ matrix.petsc_ver }} | grep -o ${maj_min_rev})" | |
| hdf5_ver="$(echo ${{ matrix.hdf5_ver }} | grep -o ${maj_min_rev})" | |
| grep "<XSD>${xsd_ver}</XSD>" buildinfo | |
| grep "<Xerces>${xercesc_ver}</Xerces>" buildinfo | |
| grep "<SUNDIALS>${sundials_ver}</SUNDIALS>" buildinfo | |
| grep "<Boost>${boost_ver}</Boost>" buildinfo | |
| grep "<VTK>${vtk_ver}</VTK>" buildinfo | |
| grep "<PETSc>${petsc_ver}</PETSc>" buildinfo | |
| grep "<HDF5>${hdf5_ver}</HDF5>" buildinfo | |
| working-directory: Chaste/build | |
| shell: bash |