A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set
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Authors: Alexander J. Titus, E. Andres Houseman, Kevin C. Johnson, Brock C. Christensen

A utility to map whole-genome & reduced representation bisulfite sequencing (WGBS/RRBS) data by genomic position to the Illumina 450K Methylation Array CpG sites.

450K annotation file

Illumina Infinium HumanMethylation450K bead chip manifest file can be found here:

https://support.illumina.com/array/array_kits/infinium_humanmethylation450_beadchip_kit/downloads.html

Under: Infinium HumanMethylation450K v1.2 Product Files > HumanMethylation450 v1.2 Manifest File (CSV Format)

Or it can be found in the Bioconductor package: "IlluminaHumanMethylation450kanno.ilmn12.hg19" https://bioconductor.org/packages/release/data/annotation/html/IlluminaHumanMethylation450kanno.ilmn12.hg19.html

850K annotation file

Illumina Infinium MethylationEPIC bead chip manifest file can be found here:

https://support.illumina.com/array/downloads.html

Under: Infinium MethylationEPIC Product Files > Infinium MethylationEPIC v1.0 B1 Manifest File (CSV Format)