A mapping method for Next Generation Sequencing reads
C++ HTML C Objective-C Assembly Ada Other
Latest commit d1d3349 Sep 26, 2016 @philres philres SlamSeq: MP tag changed
MismatchPositions
<type1>:<readPos1>:<refPos1>,<type2>:<readPos2>:<refPos2>,...

IMPORTANT: positions on read an reference are always reported on the plus strand!

README

Please see our github wiki for more information (https://github.com/Cibiv/NextGenMap/wiki)