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docs: add loqusDB to docs #1317

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merged 7 commits into from Nov 6, 2023
Merged

docs: add loqusDB to docs #1317

merged 7 commits into from Nov 6, 2023

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khurrammaqbool
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@khurrammaqbool khurrammaqbool commented Nov 2, 2023 •
edited

This PR:

Added: loqusDB annotations to docs.
Removed: vep.rule
Fixed: fixed missing "`".

Review and tests:

  • Tests pass
  • Code review
  • New code is executed and covered by tests, and test approve

@khurrammaqbool khurrammaqbool added this to the Release 13 milestone Nov 2, 2023
@khurrammaqbool khurrammaqbool self-assigned this Nov 2, 2023
@khurrammaqbool khurrammaqbool requested a review from a team as a code owner November 2, 2023 11:04
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codecov bot commented Nov 2, 2023 •
edited

Codecov Report

All modified and coverable lines are covered by tests ✅

Files Coverage Δ
BALSAMIC/commands/base.py 100.00% <100.00%> (ø)
BALSAMIC/commands/config/base.py 100.00% <100.00%> (ø)
BALSAMIC/commands/config/case.py 100.00% <100.00%> (+3.44%) ⬆️
BALSAMIC/commands/config/pon.py 100.00% <100.00%> (+4.87%) ⬆️
BALSAMIC/commands/init/base.py 100.00% <100.00%> (ø)
BALSAMIC/commands/options.py 100.00% <100.00%> (ø)
BALSAMIC/commands/report/base.py 100.00% <100.00%> (ø)
BALSAMIC/commands/report/deliver.py 100.00% <100.00%> (ø)
BALSAMIC/commands/report/status.py 100.00% <100.00%> (ø)
BALSAMIC/commands/run/analysis.py 100.00% <100.00%> (ø)
... and 20 more

📢 Thoughts on this report? Let us know!.

@khurrammaqbool khurrammaqbool linked an issue Nov 2, 2023 that may be closed by this pull request
Annotate SNVs and SVs with Somatic and Germline observation frequencies from LoqusDB #1146
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ivadym
ivadym reviewed Nov 6, 2023
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@khurrammaqbool khurrammaqbool linked an issue Nov 6, 2023 that may be closed by this pull request
Export observations from Loqusdb and start annotating variants in Balsamic #1318
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6 tasks
ivadym
ivadym approved these changes Nov 6, 2023
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Well done 👍 ⭐

@khurrammaqbool khurrammaqbool reopened this Nov 6, 2023
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sonarcloud bot commented Nov 6, 2023

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
No Duplication information No Duplication information

@khurrammaqbool khurrammaqbool merged commit 6a6c6e5 into develop Nov 6, 2023
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@khurrammaqbool khurrammaqbool deleted the doc/add_germline_somatic_locusdb branch November 6, 2023 13:37
@ivadym ivadym mentioned this pull request Nov 6, 2023
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@ivadym ivadym ivadym approved these changes

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BALSAMIC
Status: Archived
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Release 13
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@khurrammaqbool @ivadym