Merge branch 'develop' into release/10.0.3

CHANGELOG.md

@@ -3,6 +3,13 @@
 All notable changes to this project will be documented in this file.
 This project adheres to [Semantic Versioning](http://semver.org/).
 
+## [Develop]
+
+### References
+
+- gnomad: r3.0 -> r3.1.1
+- [NEW] gnomad mt: r3.1
+
 ## [10.0.3]
 
 - Remove duplicates from Glnexus output

definitions/download_parameters.yaml

@@ -240,6 +240,24 @@ gnomad:
     - tabix
     - vcfanno
   type: recipe
+gnomad_chrsplit:
+  analysis_mode: case
+  associated_recipe:
+    - mip
+  data_type: SCALAR
+  default: 1
+  program_executables:
+    - bcftools
+    - bgzip
+    - tabix
+  type: recipe
+gnomad_mt:
+  analysis_mode: case
+  associated_recipe:
+    - mip
+  data_type: SCALAR
+  default: 1
+  type: recipe
 gnomad_pli_per_gene:
   analysis_mode: case
   associated_recipe:
@@ -371,6 +389,8 @@ recipe_core_number:
     genomic_superdups: 1
     giab: 1
     gnomad: 1
+    gnomad_chrsplit: 13
+    gnomad_mt: 1
     gnomad_pli_per_gene: 1
     hapmap: 1
     human_reference: 1
@@ -423,6 +443,8 @@ recipe_time:
     genomic_superdups: 1
     giab: 1
     gnomad: 25
+    gnomad_chrsplit: 32
+    gnomad_mt: 1
     gnomad_pli_per_gene: 1
     hapmap: 1
     human_reference: 1