Merge af98e70 into c1cdf63

Clinical-Genomics · Sep 7, 2021 · 4f4de15 · 4f4de15
2 parents c1cdf63 + af98e70
commit 4f4de15
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diff --git a/containers/glnexus/Dockerfile b/containers/glnexus/Dockerfile
@@ -0,0 +1,26 @@
+################## BASE IMAGE ######################
+
+FROM clinicalgenomics/mip_base:2.1
+
+################## METADATA ######################
+
+LABEL base_image="clinicalgenomics/mip_base:2.1"
+LABEL version="1"
+LABEL software="glnexus"
+LABEL software.version="1.4.1"
+LABEL extra.binaries="glnexus"
+LABEL maintainer="Clinical-Genomics/MIP"
+
+WORKDIR /app
+
+ENV PATH="/app:${PATH}"
+
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends \
+            libc6 \
+            ca-certificates
+
+RUN wget --no-verbose https://github.com/dnanexus-rnd/GLnexus/releases/download/v1.4.1/glnexus_cli
+
+RUN chmod 700 /app/glnexus_cli
+
diff --git a/templates/mip_install_config.yaml b/templates/mip_install_config.yaml
@@ -97,7 +97,7 @@ container:
   glnexus:
     executable:
       glnexus_cli:
-    uri: ghcr.io/dnanexus-rnd/glnexus:v1.4.1
+    uri: docker.io/clinicalgenomics/glnexus:v1.4.1
   hmtnote:
     executable:
       hmtnote: