remove rseqc read duplication analysis

CHANGELOG.md

@@ -9,6 +9,7 @@ This project adheres to [Semantic Versioning](http://semver.org/).
 - Updates expansionhunter variant catalog
 - Changes sv annotation overlap back to 0.8 (from 0.5) with the new tiddit update
 - New version of MegaFusion. A bug in the previous version prevented SVDB from writing the format and sample field in the vcf.
+- Remove the RSeQC read duplication analysis as it fails often.
 
 ### Tools
 

lib/MIP/Recipes/Analysis/Rseqc.pm

@@ -292,16 +292,6 @@ sub analysis_rseqc {
     );
     say {$filehandle} $NEWLINE;
 
-    say {$filehandle} q{## Rseqc read_duplication};
-    rseqc_read_duplication(
-        {
-            filehandle           => $filehandle,
-            infile_path          => $infile_path,
-            outfiles_path_prefix => $outfile_path_prefix . $UNDERSCORE . q{read_duplication},
-        }
-    );
-    say {$filehandle} $NEWLINE;
-
     close $filehandle;
 
     if ( $recipe{mode} == 1 ) {